Planctopirus limnophila: Plim_0499
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Entry
Plim_0499 CDS
T01225
Name
(GenBank) DNA-directed RNA polymerase, alpha subunit
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
plm
Planctopirus limnophila
Pathway
plm03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
plm00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Plim_0499
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
plm03021
]
Plim_0499
03400 DNA repair and recombination proteins [BR:
plm03400
]
Plim_0499
Enzymes [BR:
plm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Plim_0499
Transcription machinery [BR:
plm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Plim_0499
DNA repair and recombination proteins [BR:
plm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Plim_0499
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
GSIII_N
Motif
Other DBs
NCBI-ProteinID:
ADG66348
UniProt:
D5SQ96
LinkDB
All DBs
Position
617866..618876
Genome browser
AA seq
336 aa
AA seq
DB search
MRIRWRGLELPSRVVPERETLSSTYGKFTVEPFERGFGSTIGNSLRRILLSSLEGSSVTS
VKIQGVQHEFTTIPGIVEDVTEIVLNLKAIIVKNHSPSTKTLRIEKTSRGVVTAGDIITD
DQVEILNRDLVIATMTDDVPLYLEMTVENGRGYIPAADHHGPEQELGVIPLDAIFSPVVR
VRYLIEETRVGQRTNYDRLILEIWTNGTVTPESALVESAKILRKHLNPFITYREPGPEMF
PEGGLRNMLEATGYAPVDLELEEKLGQSLAELNLSVRATNCLESEGINFVRDLVTRTEDQ
LLQVRNFGETTLTEVRERLGLIGLRLGMKLPNSARV
NT seq
1011 nt
NT seq
+upstream
nt +downstream
nt
atgcggattcgctggcgtggactggaattgccgagccgggttgttcctgagcgcgagaca
ttgagttcgacttacggcaagtttacagttgaaccgttcgaacgtggtttcggttcaacg
atcggtaacagcttgcgtcggattctgctttccagtctggaaggtagctctgtgacttcg
gtcaagattcaaggtgtccagcatgaattcacgacgatcccggggattgtcgaggatgtg
actgagatcgttctgaatctgaaggcgatcatcgtcaagaatcacagtccttcgaccaaa
actctgcgaattgagaagacctcgcgtggagttgttactgctggcgatatcatcaccgat
gatcaggtggaaatcctgaatcgtgatctcgtgatcgccacgatgactgatgacgtgccc
ctgtatctggaaatgaccgttgagaatggccgtggttatattcctgcggctgatcatcat
ggtccggaacaagagctgggagttattcccctcgatgcgattttctcacctgtggttcgt
gtccgttatctgatcgaggagactcgagttggtcagcggacgaactacgaccgcctgatc
ctcgaaatctggaccaacggtacagtcactcctgaatctgcactcgtggagtctgccaag
attctgcgcaagcatctcaatccgtttattacctaccgcgagccaggtccggaaatgttc
ccggaaggtggactccggaatatgctcgaagctacgggatatgctcctgtggatcttgag
ttggaagagaagctgggccagagtctggctgagctgaatctttctgtgcgtgcgacgaac
tgtctggaatctgaaggaattaacttcgttcgagaccttgtgacgcgaacggaagatcaa
cttctgcaggtgcgaaatttcggtgagacaacccttacggaagttcgcgagcgtctggga
ttgattggcttgcggttgggtatgaagttgcctaactcggcacgtgtttag
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