Planctopirus limnophila: Plim_0849
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Entry
Plim_0849 CDS
T01225
Name
(GenBank) UvrD/REP helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
plm
Planctopirus limnophila
Pathway
plm03420
Nucleotide excision repair
plm03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
plm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Plim_0849
03430 Mismatch repair
Plim_0849
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
plm03400
]
Plim_0849
Enzymes [BR:
plm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Plim_0849
DNA repair and recombination proteins [BR:
plm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Plim_0849
MMR (mismatch excision repair)
Other MMR factors
Plim_0849
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
Viral_helicase1
AAA_30
AAA_11
AAA_16
DEAD
PcrA_UvrD_tudor
DUF7381
Motif
Other DBs
NCBI-ProteinID:
ADG66693
UniProt:
D5SSE5
LinkDB
All DBs
Position
complement(1091049..1093586)
Genome browser
AA seq
845 aa
AA seq
DB search
MTQLLDDLTPSQAAAVEHFEGPLLVLAGPGSGKTRVVTRRIARLIERRVHPAEILAITFT
NKAAREMAERVEHLIPGRRVAVSTFHKFCARILRQYGGVVGLKPNFSILDVKDQDAALKE
AVKEEGFDPTHYSPSRIGWRIGQLKNECISPGMFAQQAGERVGTHLDSVVAKAYGRYQQI
LLDANAVDFDDLLLHVVTILKENPNLRQSLDERYRFILVDEYQDTNQAQYQIVSALSQNE
PNLCATGDPDQSIYGWRGAQIENILRFERDFPRVKMVRLEDNFRSTPEILAAADDLIRHN
TQRKAKSLRTSNPSGLPVEIRQYADGFQEADSLAAEIRERVASGERQYSDFAIFYRVNSL
SRSIETALGRARVPFAITGGVAFYERTEVKDLIAYLRVIENPDDRPAFRRIVNTPVRGIG
KNSQEKLDRWASARNLNLWDAVHQIDASIGLPKKAEYSLKLFANLLDELARRSHGPIAEL
LEVIVERTGYLQNLSGLEPEEYANRKANVEELVASARQFDQDHVEGGSLSEFLETCSLVQ
DADTIDESAGQVQLMTLHSAKGLEFPCVYLVGVEHGLLPHERSLREGDPLQIEEERRLLF
VGMTRAREELYLTWTRLRSTHGRLLSTIASQFLTELNVARHDYSTDDDTSFGDWSPQEMR
RGTSGDSILAQMADWGEQARKESSNPSDKATSTEDDQADLAEPGVDSQLFASSEEDTQPR
ATFIDRVLESAVTPEDPSGHETTASQPVTSRNSRSFSKKKAPRVPEAERIDQLKSRLMTG
ADLMARDQSLHRFQLGMQVRHPEYGRGLVVGLSLANNRPTVRVEFESSHEEKDFIISHAP
LQPLR
NT seq
2538 nt
NT seq
+upstream
nt +downstream
nt
gtgactcaacttttagatgatttgacaccatcgcaggcagcagccgtagaacacttcgaa
gggcccctgctggttctcgccggcccaggttcgggaaaaacccgtgtggtcactcggcgg
attgccagactcatcgaacggcgggttcatcctgcggaaattctggccatcacattcact
aataaagccgcccgggagatggccgaacgtgtcgagcatctcattcccggaagacgtgtg
gccgtcagcacatttcataagttttgtgcccgcattttgaggcagtatggcggtgtcgtt
ggcctcaaacccaatttctcgattctggatgtgaaagatcaggatgcggctctgaaagaa
gccgtcaaagaggaaggcttcgaccccacacattacagccccagtcgcattggctggcgg
attggtcagttaaaaaacgagtgcatttcaccgggcatgtttgctcagcaggccggtgaa
cgcgtcggtacacatctcgattcggtcgtcgcaaaagcgtatgggcgatatcaacagatc
ctccttgatgccaatgccgtcgatttcgacgacctgttgctgcatgtggtgaccatcctc
aaagagaacccgaatctgcgacaatcgctcgatgaacggtatcgcttcatcctggtcgat
gagtatcaggataccaatcaggcgcaataccagattgtctccgccctttcacaaaacgag
cccaacctgtgtgccacaggtgatcctgatcagtcgatttacggctggcggggagcacaa
atcgagaacattctgcgatttgaacgcgacttcccccgcgtcaaaatggtgcgactcgaa
gacaatttccgaagtaccccggagatcctggcagcagccgacgacctgattcgccataac
acccagcgcaaagccaaaagtctcagaacgtcaaacccttcgggtttacctgtcgagatt
cgacagtatgccgatggcttccaggaggcggattcgctggcggccgaaatccgcgagcga
gtggccagtggcgaacgtcaatactcagattttgccatattctaccgcgtgaactcgctc
tcccgctccattgaaacagctctcggacgagcccgcgtcccgtttgccatcaccggaggt
gtcgcgttctatgaacggacggaagtcaaagacctgattgcctatttgcgagtcattgag
aatccggatgatcgccctgcgtttcggcggattgtgaacacacccgtccgtgggattggc
aagaattcgcaagaaaagctggatcgctgggccagtgcacgaaatctcaatctgtgggat
gccgtgcatcagatcgacgcttcgatcggtctaccgaaaaaagccgagtactcgctgaag
ctgtttgccaatctgctcgacgaactggcccgtcgatcccatgggccgattgcagaactg
ttggaggtgattgtcgagcgaactggctacctgcagaacctgagtggactggaacccgaa
gagtacgccaaccgcaaagccaacgtggaagaactggtcgccagcgcccgccaattcgat
caggatcatgtcgaagggggttcactcagtgaattcctcgaaacctgctccctggtgcag
gatgccgacacgattgatgaatcggccggtcaggtgcaattgatgactttgcattctgcc
aaaggtttggagttcccttgcgtctatctggtgggtgtcgaacatggattgttacctcac
gagcgctcgttgcgtgaaggagatccgctccagatcgaagaagagcggcggttgctattc
gtcggcatgactcgggcccgcgaagagttgtatctcacctggacacgcttgcgatccaca
catggccggttactcagtacgattgccagtcagttcttgactgagttgaatgtcgcgcga
catgattactccaccgatgatgacacctcttttggcgactggtctcctcaggaaatgcga
cgggggacatccggagattcgattctcgcgcaaatggctgactggggagaacaggccaga
aaagagtcctccaatccatctgacaaagccacctcgacagaagatgatcaagcagatctg
gccgaacccggcgttgactcacaactcttcgcttcctctgaagaagacacacaaccgagg
gcgacctttattgatcgtgttctggaatcggcagtgactcccgaagatccgagtggccac
gagacaacggccagtcagccggtgacatcgcgaaactcccgatctttctcgaagaaaaaa
gctcctcgcgtgcccgaagccgaacgaatcgaccaactcaagtcgcggctgatgaccggg
gctgatctcatggctcgcgatcaatcgctccacaggtttcaactgggtatgcaggtcagg
cacccggaatacggccgggggctcgtggtcggattatcgctcgccaacaaccggcccaca
gtccgcgtcgagtttgaatccagccacgaagaaaaagacttcattatttctcacgccccg
ctgcaaccccttcgctga
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