Planctopirus limnophila: Plim_1142
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Entry
Plim_1142 CDS
T01225
Name
(GenBank) RNA polymerase sigma factor, FliA/WhiG family
KO
K02405
RNA polymerase sigma factor FliA
Organism
plm
Planctopirus limnophila
Pathway
plm02020
Two-component system
plm02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
plm00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
Plim_1142
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Plim_1142
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
plm03021
]
Plim_1142
09183 Protein families: signaling and cellular processes
02035 Bacterial motility proteins [BR:
plm02035
]
Plim_1142
Transcription machinery [BR:
plm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Plim_1142
Bacterial motility proteins [BR:
plm02035
]
Flagellar system
Flagellar assembly proteins
Stator
Plim_1142
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r3
Sigma70_r4_2
HTH_23
MarR_2
DUF7376
GerE
Motif
Other DBs
NCBI-ProteinID:
ADG66977
UniProt:
D5STZ2
LinkDB
All DBs
Position
1451167..1451946
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AA seq
259 aa
AA seq
DB search
MVTRVIEDIQAVWNAYKQDQSSKALRNRLMENYLPLVRYNAERVWSKLPDGVDINDLISA
GVFGLMDAIEAFDMERGVKFETYCVPRIRGAMLDELRTMDWVPRLVRSKASKLESARKQA
EAELGRPPADNEVAAKMGVPLDEYEKLKSEASAVNLVSLNKKWYETDSYKDVREIDIIED
TKGEDPTLSIQKRDLMKLVTKGLNRNERLIIILYYYEELTMKEIGSTLGLSESRVSQMHS
SIVNRLKEQLGRRRPEFAQ
NT seq
780 nt
NT seq
+upstream
nt +downstream
nt
atggtgaccagggttatcgaagacattcaggccgtctggaatgcctataagcaggaccag
tcgagcaaagcactgcgtaatcgcctcatggagaattatctcccgctggtgcgatacaac
gcagagcgagtgtggtccaagcttccggatggcgtggatatcaacgacctgatttccgct
ggagtcttcggactcatggatgctattgaagcattcgatatggagcgtggagttaagttt
gaaacctactgtgtcccgcgaattcgtggagccatgctcgacgaactccgcaccatggac
tgggttcctcgacttgtgcgcagcaaagccagcaagctggaatcggcccgcaagcaggcc
gaagccgaactcggcagacctccggctgataatgaagtcgctgccaagatgggcgtccct
ctggatgagtacgaaaagctcaagagcgaagccagtgctgttaatctcgtcagcctgaac
aagaagtggtacgagaccgatagttataaagatgttcgtgaaatcgacatcattgaagat
actaaaggcgaagacccgactctcagcatccagaagcgtgacctgatgaaactggtcacc
aaaggtctcaaccgcaacgaacgcctgatcatcattctctactactacgaagagttgacg
atgaaggaaattggcagcactttagggctgtcagaatctcgcgtgagccagatgcattcg
agtatcgtcaaccgactcaaagaacagcttggccgccgcagaccggaatttgctcagtaa
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