Planctopirus limnophila: Plim_1229
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Entry
Plim_1229 CDS
T01225
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
plm
Planctopirus limnophila
Pathway
plm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
plm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Plim_1229
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
plm03019
]
Plim_1229
03400 DNA repair and recombination proteins [BR:
plm03400
]
Plim_1229
Enzymes [BR:
plm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Plim_1229
Messenger RNA biogenesis [BR:
plm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Plim_1229
DNA repair and recombination proteins [BR:
plm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Plim_1229
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
HTH_40
RecQ_Zn_bind
ResIII
SWIB
HTH_23
HTH_29
Glycolytic
Motif
Other DBs
NCBI-ProteinID:
ADG67063
UniProt:
D5SUL1
LinkDB
All DBs
Position
1572633..1574972
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AA seq
779 aa
AA seq
DB search
MHGLQPLSSAFREESLVSMVDVTDLADCEITREKLDQASSSQFVAQGSCLNEARLLLQRL
WGYEDFRPLQEQVIQALLAGRESVVVLPTGGGKSLCYQVPALLKPGLAIVVSPLISLMFD
QVSSLQEVGVAAAAIHSGLSNQERQQIAGQIRSGELRLLYLSPERLMTDRMLGFLEQVPL
SMLAIDEAHCISDWGHDFRPEYRMLSGLKDRFPQLPIHAFTATATQEVRQDIARQLGLAN
PQFHVGSFDRPNLIYRVIPREDRDQQVISTIRRHPGESGVVYCLRRKDVDDVTTMLKQAG
FRALPYHAGLPDEERHANQHAFLNDHVEIIVATVAFGMGIDKSDVRFVIHTGAPKSLEAY
QQESGRAGRDGLDAECWLFYAQGDFALWRSLQANLPEKAQQTAQQVLAGMEGFCQSTKCR
HRAIIEYFGQAGESGECGACDICLGELTEVEDSLVVSQMILSCVVRVEQSFGADHVCKVL
VGSRAKNILNRGHDQLSTFGLLKGVDLKVLRHWIEQLISQSFLERYGEYGLLRVTPAGRL
VLKGVQSPQLLVANSTSFRQTGVAQVAWAGVDRELFEELRDLRRQLATERGVPPFIIFGD
APLREMAAVRPLSTISFRQIRGIGDKKTSLYGEVFVAVISRYCHERNLAGDQFAVREQSQ
NSPPATVDQSPPIKREPGEIQKRAYELFSSGQELEAVAKVLERSRSTVAQYLEEYILDRG
LQDGLPWVEKSEFSQIEGAFEAEDHRRLKPAFDRLNGQVTYEKLRVVRACLQNRGHWPK
NT seq
2340 nt
NT seq
+upstream
nt +downstream
nt
atgcacgggttgcagccactcagttcagcattcagggaggaaagcttggtcagtatggtg
gacgttactgatttggctgattgcgaaatcacccgtgaaaaactcgatcaagcttcgagt
tctcaattcgtcgctcaaggttcctgcctcaatgaagctcgtttgttacttcaacgactt
tggggatacgaagattttcggcctcttcaagaacaggtgattcaagctttgctcgctggg
cgggaaagtgtcgtggtgcttcccacgggcggcgggaaatcactgtgctaccaggttccc
gctctgttaaagccaggcctggcgattgtcgtttcaccgttgatttcactgatgtttgat
caggtgtcgtcacttcaggaagtaggtgttgcagctgcggccattcacagcgggttgtcc
aatcaggagcggcagcagattgccggtcagatccgctcgggtgaacttcgattgctctac
ctttctcctgagcgattgatgaccgaccggatgttgggctttctcgagcaagtcccgctt
tccatgctggccattgatgaagctcactgcatcagtgactggggacacgattttcgcccg
gaatatcggatgctttcgggcttgaaagatcgctttccacaactccccatccatgcattt
acggcaaccgccacacaggaagttcgtcaggatatcgcccggcaactcggcctggccaat
cctcaattccatgtcggatcatttgatcgaccgaatttgatctaccgggtcatccccaga
gaagatcgagatcagcaggtgatttcgaccatccggcggcatcccggagaatcaggtgtc
gtctactgtctccgcagaaaagatgtcgacgatgtaacgacgatgctcaagcaggccgga
tttcgagcactcccttaccatgccggtctgcccgatgaagagcggcatgccaaccagcat
gcatttctcaatgatcatgtcgagatcatcgtcgcgacagtcgcctttggcatggggatt
gataagtcggatgtccggttcgtcatccacaccggtgcaccaaaatctttagaagcttac
cagcaggaaagtggtcgggcaggtcgcgatggactcgatgccgagtgctggctcttttat
gcccagggggattttgctttatggcgtagcttgcaggctaatcttccagagaaggctcaa
cagacagcgcagcaggtcctggctggaatggaagggttctgccaatcgacaaaatgtcga
catcgagcgattatcgaatactttggacaggcgggggaatcgggtgaatgtggtgcctgc
gatatctgtctgggcgaactgacggaagttgaagattcgttggtggtctcgcaaatgatt
ctctcttgtgtcgtaagagtcgaacaaagtttcggggcagatcatgtttgtaaagtgctg
gtgggatcgcgcgccaaaaacatccttaatcgtgggcatgaccaactgagcacatttgga
ttgttgaagggcgtggacttgaaagtcctgcgccattggatcgagcaactcatctcgcaa
agttttctcgaacgatatggcgagtacggcctcctgcgggtcacgccggcaggtcggctt
gttttgaagggtgtccagagcccgcaattactcgtcgcgaattcgacctcgttcagacag
acaggtgttgctcaagtggcgtgggcaggtgttgatcgtgaactcttcgaagagttgcgt
gatttgcgaaggcaactggcaacagagcgtggagtgcccccatttatcattttcggagat
gctccactgcgggagatggcggctgtccgtccgttgagtacgatcagttttcgacagatt
cgtgggattggagataaaaagaccagcctgtacggcgaggtctttgtcgctgtgatttcg
cggtattgtcacgaacgcaatctggctggcgatcagtttgccgtgagagaacaaagtcaa
aactctccaccggcaactgtcgatcaaagcccgccgatcaagcgagagcccggagagatc
cagaagcgagcatatgaattgttctccagcgggcaggagcttgaggctgtggcaaaagtt
ctagagcgaagccgatccactgtcgcgcaatatctggaagaatacattctggatcgggga
ctgcaggatggtctcccgtgggttgaaaagagcgagttctctcagattgagggagctttc
gaggcagaggatcaccgccgattgaagcccgcgtttgaccggctgaatggtcaggtcacc
tacgaaaaattgcgagtcgtgcgcgcctgcctgcagaatcgcggccactggcccaagtga
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