Planctopirus limnophila: Plim_1259
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Entry
Plim_1259 CDS
T01225
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
plm
Planctopirus limnophila
Pathway
plm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
plm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Plim_1259
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
plm03019
]
Plim_1259
03009 Ribosome biogenesis [BR:
plm03009
]
Plim_1259
Enzymes [BR:
plm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Plim_1259
Messenger RNA biogenesis [BR:
plm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Plim_1259
Ribosome biogenesis [BR:
plm03009
]
Prokaryotic type
rRNA helicases
Plim_1259
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_30
Cas3-like_C_2
AAA_19
Hydrolase
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ADG67093
UniProt:
D5SUP1
LinkDB
All DBs
Position
complement(1611391..1613217)
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AA seq
608 aa
AA seq
DB search
MTELPADIETTTTFADLNISPPILSAVTASGYVNPTPIQARTIPLLIEGRDVLGMAQTGT
GKTAAFAIPMLQAIDLSSSATQVLILAPTRELAMQVAEAFEKYAANLKGLRVAAIYGGQD
YQLQFRQLNRGAHVIVGTPGRVMDHIRRGSLKLDSLKGLVLDEADEMLRMGFAEDVEWIL
EQTPSQRQIALFSATMPDSIRRIAQKHLKNPAEITIKRRTATAETIRQRFITVPPFQKEA
VLARILETEPIDAVIIFVKTKSTTVPLAEFLASQGYRTAALSSDVPQAQRERIVEHLKSG
RLDIVIATDVAARGLDVQRITHVINFDLPSDSESYVHRIGRTGRAGRQGDTILFLHPRER
FQLRRIEQVTRQPIEPMQVPAAAQVNERRIERFKSKIKTALDHRDLEAFSGIIESLQKES
DTPIEQIAAALAVLAAGDAPLLVKDDIRDFNSIETRNREPAPGRGNPRLARAQDAERSMR
PRGREAGREERAPRSEGRSFRPMETFRIQVGQIHQVKPANIVGAIANETGLDSSCIGRIE
IYDNYSTVDLLAGMPDDVFHSLKAVEVLGQQLNISRATEHPANEEFSARKSKGRFDSKRN
LKPNQQRS
NT seq
1827 nt
NT seq
+upstream
nt +downstream
nt
atgactgaattgcccgctgacatcgaaaccaccacgacttttgctgatttgaacatcagc
ccgccgattctctcggctgtcactgcctccggatatgtgaatccgactcctattcaggct
cggacgattcccctgttgatcgagggccgagatgtccttggtatggctcaaaccgggact
ggtaaaaccgctgcttttgccatccccatgctacaggccattgatctctcgtcatcggcc
acgcaagtgctcatcctggcaccgactcgagagttggcgatgcaggtggctgaagccttt
gaaaaatatgctgccaacctcaaagggttgcgtgttgccgccatttatggtggtcaggat
taccaactccagttccgccagttgaaccgtggtgcccatgtgattgtgggaaccccgggc
cgagtgatggatcatattcgtcgtggctcactcaagctcgattcactcaagggtctggta
cttgatgaagccgacgaaatgctgcgcatggggttcgccgaagatgtcgagtggattctc
gaacagacaccttcccagcgtcaaattgcactcttcagtgccaccatgcccgattcgatc
cgtcgcatcgcgcagaaacacctgaaaaatcctgccgaaatcactatcaagcgtcgtacg
gcgactgccgaaacgattcgccagcggtttatcaccgtgccgcctttccagaaggaagcg
gttctcgcccgcattctcgaaacggaacccatcgacgcggtcattatcttcgtcaaaacc
aagagcacgacagttccattggctgaatttctcgccagccagggctatcgaacagctgcc
ctttcgagcgatgttcctcaagctcaacgcgagcgtattgtcgaacatctcaagtcaggt
cggctggatattgtcattgccacagatgtcgctgcccgcggactcgacgtccagcgcatc
acgcacgtcatcaactttgatctcccttcggatagcgaaagctatgtccaccgcattggc
cgaacaggtcgtgcgggtcgtcagggcgataccattctgttcctgcatccccgcgaacgt
ttccaactccgccgcatcgaacaagtgactcgccagcccattgaaccgatgcaggtgcct
gctgctgctcaggtcaacgaacggcgcattgaacgtttcaaatccaaaatcaaaacagca
ctcgatcaccgagatctggaagcgttctctggtatcattgaaagtctgcagaaagaatcc
gacacgccgattgagcagattgccgctgccctggctgtgctggctgctggcgatgcaccg
ttgctggtgaaggacgacatccgggatttcaactcgattgaaactcgaaatcgtgaacca
gcacccgggcgtggcaatccgcggttggcacgtgctcaggatgccgagcgcagcatgcga
cctcgagggcgagaagcgggacgcgaagaacgtgctccccgttccgaaggtcgctccttc
cgcccgatggaaaccttccgcattcaggtcgggcagatccatcaggtcaagccggcgaac
attgtgggtgccattgccaacgaaactggtctcgacagttcatgcattgggcggatcgag
atttacgataactacagcactgtcgatctgctggccggtatgccggacgatgtgttccat
tcactcaaagccgtcgaagtgctgggccagcaactcaacatttcccgggccacagagcac
cctgccaacgaagaattttccgctcggaaatccaaaggacgctttgactccaagcgaaat
ctgaaacccaatcagcagcgatcgtag
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