Planctopirus limnophila: Plim_1265
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Entry
Plim_1265 CDS
T01225
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
plm
Planctopirus limnophila
Pathway
plm03030
DNA replication
plm03430
Mismatch repair
plm03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
plm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Plim_1265
03430 Mismatch repair
Plim_1265
03440 Homologous recombination
Plim_1265
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
plm03032
]
Plim_1265
03400 DNA repair and recombination proteins [BR:
plm03400
]
Plim_1265
Enzymes [BR:
plm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Plim_1265
DNA replication proteins [BR:
plm03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Plim_1265
DNA repair and recombination proteins [BR:
plm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Plim_1265
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
HHH_3
DUF655
Motif
Other DBs
NCBI-ProteinID:
ADG67099
UniProt:
D5SUP7
LinkDB
All DBs
Position
1619359..1622889
Genome browser
AA seq
1176 aa
AA seq
DB search
MTSSRPFAHLHCHSQFSLLDGATRLDGLIKKVKASGMNSVAITDHGNLYGALDFYLMAKG
AGVNPILGMEAYIAPGSRLEKSGASRMKEASYHLTLLAMNRVGFQNLVKLSSKAFIEGFY
YKPRIDKEILEAHSEGLICLSGCAAGELSQHLLGERFEEAEKLCHWYSQTFGDRFFMEIQ
NAGYQIQRDCLERTVDLAKKMGLPLVATNDAHYLNTEDAAVQDVLLCVNTKSERSDPKRM
KMEGNQLFVRTPEEMYAAFEGFEDAVARSQEIADRVDIDLDLKTRHFPVFTTPENKRDID
YLRELCEEGLKWRYGEENIRQEHRDRLAFELSVIEKMGYPSYFLIVWDFVRFAIEKGIPA
SARGSACGALVAYVLGLSHVCPIKYDLLFERFLDPSRTEPPDIDIDFCRDRRQDVIDYTK
AKYGEANVSQIGTFGTLKAKAAIRDVGRVLAVPLKRVDEIAKLVPEELGIELKEALEKSS
DLKAAYDTDPQIRELFDYAIQLEGLARSAGTHAAGVVVSDRPISDYVPLQTISGKTDLVT
QWEGPTVEKAGLLKMDFLGLRNLTILDKAVKNVALHRGVTIDPVKLPLDDKETYALLQRG
ETKGIFQLESGGMRDLLTKMKPDSFNDIIATSALYRPGPLEGGMVMTYVEVKHKRAPLPR
VHPIMDTILDETYGVMVYQEQVMRILNRLGGIELPQSYQCIKAISKKKLETIAKYKAQFV
EGSQKNGLPEAKATELFEMIEKFAGYGFNKSHSTAYAAVAYQTAFLKAHYPAEFMAALLS
CEMEDTDRINEHIDDCRRMNIEIVPPDINHCDVEFTVRGPRQVAFGLGAIKGVGEATTQA
IVEARQLKGPFTSIFDLCERVDAKSLSKGSLEILVKAGALDSISPKRASQFACIERAVQA
AQSLQKDKARGQKNLFGGDEADSQPGESTSSATLPDVPEWSHREKLAYEREVLGFYLTSH
PLTEQAETIGRYTSYQAMQLAELEDGVEVMLGGMVSSIKKATTKKPSRNGHSRYVNFDLE
DPTGVVRCIMWPEQYAVAGEKVVADEIRFVKGKVDKRSREPNVVIDQIWTMAEVERDFTK
ALAIKFQRGIHDAAVIQRVKDLLGKYPGKSEVIIVVDTIDEADPDQRLRYTALKPLPIKV
SCNQDLREGLNDALGAGSVSLVAERRGMSRSGSIGR
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
atgacttcatcacgccccttcgcacacctgcattgtcactcacagtttagcctgctggat
ggtgcgacaagactcgacggtctgatcaaaaaagttaaagcttcggggatgaactccgtc
gcgattaccgatcatgggaatctgtatggcgcgctcgacttctatctgatggccaaaggg
gctggcgttaaccccatcctggggatggaagcttacattgctcccgggtcacgactcgaa
aagtccggggcctctcgtatgaaagaggccagttaccatctgacactgctggccatgaac
cgagtgggattccagaatcttgtcaaactttcgtccaaggcattcattgagggcttttac
tacaagccccgcatcgataaagaaattctggaagctcacagcgaaggattgatttgtctt
tccggttgtgcggctggagagctttcgcagcatttactaggtgagcgattcgaagaggcc
gagaagctgtgccactggtattcgcagacatttggcgaccgcttttttatggagattcag
aacgcgggatatcagatccagcgggattgtctcgaacggacggtcgatctggcgaagaaa
atgggcttaccactcgtcgccaccaatgacgcccactatctgaataccgaagatgccgct
gttcaggatgtcctgctctgtgtgaatacgaagtcggaacgcagtgacccgaagcggatg
aaaatggagggtaaccagctcttcgttcgcacacccgaggagatgtacgcggcatttgag
ggtttcgaagatgccgtcgcgaggtcacaggaaattgctgatcgggtcgatattgatctc
gacctgaagaccaggcactttcctgtctttaccacgcctgaaaacaaacgggatatcgat
tatctgcgagaactgtgcgaagaaggtctcaaatggcgttatggcgaagagaatatccgc
caggagcatcgcgatcgactcgctttcgagctgagtgtgatcgagaaaatgggctatccc
agctacttcctgattgtgtgggactttgttcgatttgctatcgagaaagggattcccgcc
agtgcgagaggttcggcgtgcggtgctctcgtcgcctatgtgctagggctgagtcatgtc
tgccccatcaagtacgatctcctctttgaacgctttcttgatcccagtcgtaccgagcca
ccggatatcgatatcgacttctgccgggatcgaaggcaggacgtgattgactacaccaag
gccaaatacggcgaagcgaatgtttcacagattggcacctttggaacattgaaggccaag
gccgccattcgcgatgtcggccgcgtgttggcagtcccactgaagcgtgtggatgagatt
gccaagctcgtccccgaagaactgggtattgagttaaaagaggcgctagagaaaagcagt
gatctgaaagcggcctacgatacagacccgcagattcgcgagctgtttgattacgccatt
caactcgaaggcctggcccgcagtgctggcactcatgccgcaggtgtggtggtttctgat
cgtccgatttccgactacgtgccactgcagaccatcagtggcaagacagaccttgtcacg
caatgggaagggcccacagtcgagaaggccggtcttctcaaaatggactttctcggcctg
cgaaatctcacaattcttgataaggccgtcaagaacgttgctcttcatcggggagtaacc
atcgacccagtgaagttgccactcgatgacaaggagacttacgcgcttctgcagcgtggt
gaaaccaaggggatctttcagctcgaatcgggcggcatgcgcgacctgctgaccaagatg
aagcctgatagttttaacgacatcattgcaacatcggcgctttatcgccctgggccactg
gaaggtggcatggtgatgacttatgtcgaagtgaagcataaacgggcaccgttgccgcgt
gttcatcccatcatggataccatcctggatgaaacgtacggcgtgatggtttaccaggaa
caggtgatgcgaattttgaaccggctgggtggcatcgaattgcctcagtcgtatcagtgc
atcaaagccatcagtaagaaaaaactcgagacaattgccaagtataaagctcaatttgtg
gagggatcgcagaagaacggcttgccggaggcgaaagccaccgaactgttcgaaatgatc
gagaagtttgccggctatggcttcaacaaatctcacagcacggcctatgccgcagtagcc
taccagaccgcttttttgaaagcgcattatcccgcagagttcatggcagcgcttctttcg
tgcgaaatggaagacaccgaccggattaacgagcatattgatgattgccggcggatgaac
attgagattgtgccgcccgacatcaatcactgcgatgtggaattcacggttcgcgggcca
cgtcaggtggcctttggattaggagccatcaaaggtgttggtgaggcgaccacgcaggca
attgtcgaagctcgacagttgaaaggccctttcaccagcatttttgatctgtgtgaacgt
gtcgatgccaagagcctgtcgaagggttcattggaaattctcgtaaaggctggggcactt
gatagtatttcgccgaaacgcgcttcccagttcgcgtgtattgagcgggctgtgcaggcg
gcacagtcgctacagaaagacaaagcccgggggcagaagaatctgtttggcggtgatgaa
gcggattctcagcccggtgaaagcacttcgtcggcgacacttcccgatgtgcctgaatgg
tcacatcgagaaaaactggcttatgagcgagaagttttgggattttacctgacatctcat
ccgctcaccgagcaggccgaaacgatcggtcgatacacgtcttatcaggcgatgcaactg
gccgaacttgaggatggtgtcgaggtgatgctgggagggatggtttcctctattaagaag
gccaccacaaagaagcccagccgtaatgggcacagccggtatgtgaacttcgatctggaa
gatccgacaggtgtggtgcggtgcattatgtggcctgagcagtatgcggtggcgggcgaa
aaagtcgttgcggatgagattcgcttcgttaagggaaaggtcgataagcggagccgtgag
ccgaacgtggtgattgaccagatctggacgatggccgaagtggagcgggattttaccaaa
gcactggcgatcaagttccagcgggggattcacgatgcggctgtgattcagcgagtcaaa
gatctcctgggcaaatatcctggcaaatccgaagtgatcattgtggtggataccatcgat
gaggcggatcctgatcagcggttgagatacacggcccttaagcccttaccaatcaaggtt
tcgtgcaatcaggatttacgcgaagggctgaatgatgcactgggcgcaggaagtgtctct
ctggtagccgaacgccgagggatgtcgcgttcgggaagtattggaaggtag
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integrated database retrieval system
