KEGG   Planctopirus limnophila: Plim_1639
Entry
Plim_1639         CDS       T01225                                 
Name
(GenBank) sigma-54 factor interaction domain-containing protein
  KO
K07713  two-component system, NtrC family, response regulator HydG
Organism
plm  Planctopirus limnophila
Pathway
plm02020  Two-component system
Brite
KEGG Orthology (KO) [BR:plm00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    Plim_1639
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02022 Two-component system [BR:plm02022]
    Plim_1639
Two-component system [BR:plm02022]
 NtrC family
  HydH-HydG (metal tolerance)
   Plim_1639
SSDB
Motif
Pfam: Sigma54_activat AAA_lid_14 Response_reg Sigma54_activ_2 HTH_8 AAA_5 Mg_chelatase AAA AAA_2 AAA_3 HTH_17 AAA_16 HTH_28 Glyco_trans_4_2 TIP49 HTH_23 bpMoxR AAA_30 AAA_7 MCM nSTAND3
Other DBs
NCBI-ProteinID: ADG67471
UniProt: D5SWX1
LinkDB
Position
complement(2116497..2117918)
AA seq 473 aa
MAKEIKPAETSEVRVRVLIVDNDEAHAQAVADSLTRVGYDCTVASAGAESGKKALDLIEV
ENFDVIITELMMDEVDGLEILRRSKAELPDAEVILLTGHASIKSALTAGQHGAHTYLTKP
LDISELRQAVDRASSRIRLLRKTFELSRRLDEKFGFEGVIGNSPSMHRLIEKLRSVAPTD
STVLIQGESGTGKELVARAIHQNSERKNKPFVPLNISALPESILESELFGHEAGAFTGAA
TKRIGKFEYANGGTLFLDEVGEMPMATQIKLLRVLEERRITRLGANDEIPINVRLVAATN
ADLQDMIKKGTFRKDLYFRLSVVTIVLPPLSDRRADIPFLIDHFLKQFAERQKRPIPTVT
RQVQQALMAYAWPGNIRELRNVVEGMMVLDIDGKLDVDDLPEGIGAGHHEHSEVDLIQNP
AGNDGLIGRSLNDVEKYYIARALELTGGKRDEAANLLGIGERTLYRKIREYEL
NT seq 1422 nt   +upstreamnt  +downstreamnt
atggccaaggaaatcaagcctgcagaaacgagtgaagtccgtgtccgcgtgctgattgtg
gacaacgacgaagcccatgcacaagccgtggctgacagtctgacgcgtgtgggttacgac
tgcacagtcgcttcggccggagcagaatccggaaaaaaggcactcgacctgattgaggtt
gagaactttgatgtaatcatcactgaactgatgatggacgaagtggatggcctggagatt
ctgcgcaggtcaaaggctgaactgccggatgccgaagtcattttgctgaccggacatgcc
tcgatcaaatcggcactgacagcgggacagcacggggcacatacttatctcacaaaaccg
cttgatatcagtgagttgaggcaagcggtggaccgtgccagttcgcggattcgactgctg
agaaagacatttgaactcagccggcgactcgatgaaaagtttggctttgaaggggtgatt
ggcaacagtccttcgatgcaccggctgatcgaaaagttgaggagcgtggcgccgactgat
agtaccgtcctgattcagggagaaagcgggactggcaaagaactcgtggcgcgggcgatc
catcagaacagcgaacgcaagaataagccttttgttccgctcaatatctcggcactgccg
gagagtattctcgagagcgaactgtttggtcacgaagccggagcattcaccggtgcggcg
acgaaacgaatcgggaaattcgagtatgccaacggtggcacattatttctggatgaagtg
ggcgaaatgcccatggccacacaaatcaaattgctgcgagtcctcgaagagcgtcgcatt
accaggctgggtgcgaacgacgagattccgatcaacgtccggctcgtggctgcgaccaat
gctgatctgcaggacatgatcaagaagggaacattccgtaaagatctttacttccggctt
tcagtcgtcacgattgtcttgccaccactcagtgatcgacgagcagacatcccgttcctg
attgatcattttctcaagcagtttgccgagcgccaaaagaggccgattcccaccgttacc
cgtcaggttcaacaggcattgatggcttacgcatggccagggaatattcgtgagctgcgc
aatgtggtggaagggatgatggtgctcgacatcgatggcaaactggatgtggatgatctt
ccggaagggattggtgctggccatcatgaacacagcgaagttgatctcattcagaatccc
gccgggaatgatggactcatcgggcgttcgttgaacgatgtcgaaaagtattacattgcc
cgggcgctggaattgaccggtggaaagcgcgacgaggcggccaatctattgggaattggc
gaacgcacgctctatcgcaagattcgcgagtatgagctgtaa

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