KEGG   Planctopirus limnophila: Plim_1847
Entry
Plim_1847         CDS       T01225                                 
Name
(GenBank) sigma-54 factor interaction domain-containing protein
  KO
K07713  two-component system, NtrC family, response regulator HydG
Organism
plm  Planctopirus limnophila
Pathway
plm02020  Two-component system
Brite
KEGG Orthology (KO) [BR:plm00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    Plim_1847
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02022 Two-component system [BR:plm02022]
    Plim_1847
Two-component system [BR:plm02022]
 NtrC family
  HydH-HydG (metal tolerance)
   Plim_1847
SSDB
Motif
Pfam: Sigma54_activat Sigma54_activ_2 FHA HTH_8 Yop-YscD_cpl GAF GAF_2 GAF_3 AAA_2 AAA AAA_5 FHA_2 HTH_29 Mg_chelatase HTH_23 AAA_16 Xre-like-HTH HTH_30 Herpes_BLRF2 SpoVT_C HTH_28
Other DBs
NCBI-ProteinID: ADG67677
UniProt: D5SYE9
LinkDB
Position
complement(2416894..2418921)
AA seq 675 aa
MSQEVITKADPAYLVVRTGVKRGDVYRLPHNQVTTIGRATTCRIVVQDEICSRNHCELFF
DVNCWRLRDCGSRNGTKLRGERISGDVELKFGQSFQIGSTIFGLAGSLTQRWDDDDGLDE
PIESDTVDALRERHESDSNPEILHRRRQSRFRQPVDAAARDKTSLELSRLYRLALEMGSA
TTAQGLSEIVLEGLLNASSATIGAILLMSSSLAKNSGGNDQLSVVAYRAQNHQPYHPVSD
SLSQIVLKDQEAVLARDISSDDRFLDRDSLGEIEAQSVICAPVRTAEKVYGLIHLYSTDN
VSQLEVDDLEFTLAVADQMAAGLEQLQRVEKLQAGLQRAEVENQTLREQLRSEMDLIGES
PAMQQLKNRIARIAPTDATALIRGESGSGKELIARAIHLHSNRRGGPFITMNCAALSESL
LESELFGHEKGSFTGAVGRKLGKFEQAHQGTIFLDEVGEMSPGVQAKFLRVLEGHPFERV
GGGDPVHADVRVVAATNRDLEKAVSEGTFRQDLYFRLQVVELVVEPLRRRKLDIPLLANY
FLNRFARKMARNMVGFTPGAMQALIEYDWPGNVRELQHTIERAVILCPHEAVGQADLHLS
ALGTTGKSVEPTRDISTRQTFEALPLEIVEQQHILATLEWTGWNKSQAAQILGIERSTLD
RKLKRYDVERPRERN
NT seq 2028 nt   +upstreamnt  +downstreamnt
atgtctcaagaggttattacaaaagcagaccccgcatacctggtcgttcgcaccggcgtg
aaacgcggtgatgtctaccgattgcctcataaccaggtgacaacgattggccgggcgacc
acttgccgcatcgttgtgcaggacgaaatctgcagccgtaatcattgcgagctgtttttt
gacgtcaattgctggcgcctgcgagattgtggcagtcgcaatgggacaaaactgcgtggt
gaacgcatttcaggcgatgtggagttgaagtttggccagtcgtttcagattggcagcacg
atttttggcctggccggaagtctcacgcagcgttgggatgatgacgatgggttggatgag
cccattgaatctgacacagtcgatgcactccgcgagcggcacgaaagcgacagtaatcca
gagatcctacatcgccggcgtcagtcccgcttccggcaacctgtggacgctgccgccaga
gataagacttcgcttgagctttcgaggttgtatcgactggctttggaaatgggttcagcc
acgacagctcaaggcctctcagaaattgtgcttgaaggtctcctcaatgcatcatcggcc
accatcggggccattttgctgatgagttcgagcctcgccaaaaattctggcggcaacgat
caactttcggttgtggcttatcgagctcaaaaccatcagccctaccatccggtgtctgat
tcattatcgcagattgtcctcaaggatcaggaagcggttctggctcgcgatatctcttcg
gatgatcgatttctggatcgggacagtctgggtgagatcgaggctcagagcgttatctgt
gcacctgtacgcacagcagaaaaggtatacgggctcattcatctttactcgacagataac
gtgagccaactcgaagtcgacgacctggagtttacattggctgtggctgatcagatggcc
gctggtctggaacagttgcaacgtgtcgagaagcttcaggcaggtttgcagcgtgccgag
gtcgaaaatcagacgctgcgtgagcaattacgcagtgagatggatctgattggcgaaagc
ccggccatgcagcagttgaaaaaccggatcgcacgcattgctccaacagatgcgaccgca
ctcattcggggggaaagtggctctggcaaagaattgatcgcgcgggcgattcatttgcat
agcaaccgtcggggtggccctttcattacgatgaactgtgctgcactttccgagagcttg
ctggaaagcgaactgttcggccacgagaaaggctcatttaccggtgccgttgggcgcaag
ttgggaaaatttgaacaggcgcatcaggggacgatttttcttgatgaagtgggcgaaatg
agcccgggagtacaggccaaatttctgcgagtgctggaaggacatccgtttgaacgggtc
ggtggcggcgacccggtgcatgccgatgttcgcgttgtggcggcgacgaatcgggatctg
gagaaagctgtttccgaaggaaccttccgtcaggatctttacttccggttgcaggtggtc
gaattggtggtggagccactccgtcggagaaagctggatattccgctgctcgcgaattat
ttcctgaacaggttcgctcgaaaaatggcacggaatatggtcgggtttacgcctggagcg
atgcaggcactgattgaatacgactggcccgggaacgtgagagaactacagcataccatc
gagcgggcagtgatcctttgtccccatgaggcggttggtcaggccgatctgcatctttcg
gcacttgggacaaccggcaaatctgtggagcctacgcgcgacatctcgacaaggcagact
tttgaggccttgcccctggagatcgttgagcagcagcacattctggccacattagaatgg
acaggatggaacaagtctcaggctgctcagatcttgggaattgaacgctcgacactggat
cgaaagctgaagcgctacgatgtggagaggcctcgggaaagaaactga

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