Planctopirus limnophila: Plim_2314
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Entry
Plim_2314 CDS
T01225
Name
(GenBank) hypothetical protein
KO
K19720
collagen type III alpha
Organism
plm
Planctopirus limnophila
Pathway
plm04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
plm00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
Plim_2314
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
plm00536
]
Plim_2314
Glycosaminoglycan binding proteins [BR:
plm00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
Plim_2314
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
ADG68140
UniProt:
D5SNM6
LinkDB
All DBs
Position
2993813..2998423
Genome browser
AA seq
1536 aa
AA seq
DB search
MATIQPSDESPAFVDFDEFVAYQLGEVKSAVRSTDLTTAIVGSFAWVSALCALFVISDQW
LFADGWSMVARWIWLAILVSGLGWWLTRTLLHPLLRKVSPLYAAKELETAVPALRRNLVN
LVDLQAAGRPVAPAVLKALQKRAAVSLEEVQPRQAIDHTHLLWVSCALLATVVLLAVYAV
MSPKPIWPSLWRMIPFTSIDAPTETLIREVTPGSTVRLAGSMLDVEAQLAGRIPEIVELK
FTTVDQQFVDETVRMAPVGQGGARFEARLLGERGEGFTQSFSYYIQAGDARSANYQVSIV
TPPHANVEEVEIQAPAYTGIEKQVSRGGAIHAWVGSEVKIRALANQPVTSATMIFFDDDG
MTPTGEELPVRLSQNRELTADYRPQLREDGTYARYYSIIVRTAGGETDPAPTIYPIALQI
DQPPEIRMVIPENDVAAAANSTVGFVFTARDVDFLLGPMTLIAEKQGQIIAREELAAGGV
SQQTAKTTLRLDRFALQENDELKVYATVQDNRQPTPNTARSDARLIRIQGVLPPQKQQEQ
RQQAEKQAQQVEEQARQKAAQNQAGNEPPADPAQQDPGQAPEAMSDRPQEGEGNPGQNAN
DPTRAKDSRAGEGMNQNEPQSRDDNPPSDRSDNANGKPGEERGEPSENNRTEGKSASERK
GENQDLSRQQNNDSGSKTSPENTPADPKNQSGSSGQPKSNQQNSGPQNSGPQNKGQQGSN
KSDQGLSPNGEDDSEALKRLLEKARQESRQANSKGQESGNQSRQEQKSQPENEADKSSSA
GQSDGRKRGDEGSSKESMTEDSTNSSKGNSAENQPPRNDSRQGESSQKSPAEMNDPQSSK
EPASPKEKMAEGQTKTPGDSQPESAETGDTGKPSSPQSKNSSQPMSGSEKDSQSKANGEK
SASAGDENSSAKNQGASGNESAKNGKGSRPNDQSLKPNSDNPASASDPAGDPSGTDPSQR
AGQKNKASDPSMGPPSEKLLGKSQEGGKDDEMPAQRRPGEDGTTGDLKADNERPQNSPAG
KADPGASSPKNAPKSPAPPSSDEMPPSDQRPQDASAGERGMDRQAQKTNTPGEPLEQSPN
QQPSARPNPDPQDVPAGSGEKMRGEPGKPPKANQKSQQAESGEAGQSSANPDGADGMAEG
SGNDTSSERAKPGEAGRPGTSTAKENGAPATGSQQKPSGEKPTGSKTGSQQKSGGNDQPE
GGEPAGMNSPADGKNGSQPPANPADAKGGASKTGSAPENSPPGSSKEKTSGEGNSPSNPS
GNKTPGNKPAGKEAAGGQGDKGNQSGGKGGQGGDKGQGGEKGQGGEGSDAGQSNGKGGGK
GGSSPASGTPSSSGASSGEPSGQSSSATGGGAGGEMTPRGSADNSSNAKGASGGKEGREN
QAANGPAANAPADQNQANPEFEKEAAELVLDQLERQLERGQVDQKLLDDLGWNEQQMRSF
AKRMREQINAAKSTDPTPEDLLRKRQFEEMLESARISRQRVEAQGKAVPQRDIDQAGSRR
SQVPEQYRQRFEAYTRGVQKKSATPAPPSPTPAPKP
NT seq
4611 nt
NT seq
+upstream
nt +downstream
nt
atggcaactattcaaccttccgatgaatcacccgccttcgtcgactttgacgaatttgtc
gcctatcagttgggcgaggtgaaatcggcggtgcggtccacggatctcaccacggctatt
gtcggcagctttgcctgggtcagtgcgctgtgtgccctattcgtgatttctgaccagtgg
ttgtttgccgatggctggagcatggtggcccggtggatctggctggcaattctcgtgagc
ggcctgggctggtggttgactcgcacgttgctgcatccccttctgcgtaaggtgagtccc
ctttatgccgccaaagagctggagacagccgtcccggctctcaggcggaatctggtcaat
ctggtggatttacaggctgcgggacgaccagtcgcgccggctgtcttgaaagccttgcaa
aagcgagcggcggtttctctggaagaagtgcagcccaggcaagcgatcgaccacacccac
ctgctctgggtctcttgtgcactgctggcgacggtcgttctgctggcggtctatgccgtg
atgtcgcccaagccgatctggccgtcgttatggcgcatgattcctttcacgtcgattgat
gctcccacggaaacattgattcgagaagtgaccccgggttcgacagtccgcctcgcgggg
tccatgctcgatgtcgaagcccaactggcaggacgtatccctgagatcgtcgaactgaag
ttcacgaccgttgatcagcagtttgtggacgaaaccgtccgtatggctcccgtgggccag
ggaggtgcgcggtttgaagccagactgctgggtgaacgaggagaaggattcacccagtca
ttttcgtactacattcaagccggtgatgcccgctcagccaattaccaggtgagcattgtc
acccctccccatgccaacgttgaagaagtcgagatccaggcaccggcttatacaggtatc
gagaagcaggtcagccgaggtggtgccattcatgcgtgggtcggttcggaggtgaaaatc
cgggcactggcgaatcaacccgtcacttcagccaccatgattttctttgacgacgacggc
atgacgcctacgggtgaggaacttcctgtgcggttgtctcagaaccgcgaactgactgcc
gattaccgtccacaacttcgagaagacgggacatacgcgaggtactactcgatcatcgtt
cgcacagcaggtggagaaaccgaccctgcgccaaccatctatccgattgcattgcagata
gatcagcctccggagatccggatggtcattcccgaaaatgatgtggctgccgctgctaat
tcgacggtgggatttgttttcacggcccgcgatgttgattttctcctgggcccgatgaca
ctcattgccgaaaaacaggggcagatcattgcgcgggaagaactggcggccggtggtgtt
tcacaacagacagcgaagaccaccttacgcctggatcgctttgcactgcaggagaatgat
gaactcaaggtctacgccaccgtccaggataatcgccagccaacaccgaatacggctcgc
tccgacgcacggctgattcgaattcaaggagtcttgcctccgcagaaacagcaggaacag
cgtcagcaggccgaaaagcaggcccaacaggtcgaagaacaggcccggcaaaaggcggcc
cagaaccaggcaggaaatgaaccgccagcagatcctgcacagcaggatccgggtcaagct
cccgaggccatgtctgatcgcccacaggaaggcgaagggaatcctggccaaaatgccaat
gatccaacacgggccaaagacagtcgtgccggcgaagggatgaaccagaacgagccacaa
tctcgtgacgacaatcccccctccgatcgttccgacaatgcgaatgggaaacccggtgag
gagcgtggtgaaccttcagaaaacaaccggactgaaggaaaatcagcttccgaacggaag
ggcgaaaatcaggatttgtctcgccaacagaacaatgactcaggctcgaagacttctcct
gaaaatactcccgcagacccgaaaaaccagtctggttcctcaggccagccgaaatccaat
cagcagaacagtggcccgcagaacagtggcccgcagaacaaggggcagcagggctccaac
aaatctgaccagggattatcacccaacggagaagatgattcggaagccttgaaacggttg
ttggaaaaagcccggcaggaatcgcgtcaggccaattccaaaggacaggaatcggggaac
caatcccgtcaggaacagaagtctcaacccgaaaatgaggctgacaagtcctcatcggca
ggtcaatccgatggccgcaagcgaggagatgaaggctcgagcaaggagtcgatgacggaa
gactccacaaactcttcgaagggaaattctgcggaaaatcagccgcccaggaatgattct
cggcaaggagagtcgtcccagaaatctcctgccgagatgaatgatcctcaatcatcaaaa
gagcccgcgagccccaaagagaagatggctgaaggccaaacgaaaaccccaggtgattct
caacctgaaagtgctgagacaggagataccggcaaaccttcatctcctcagagcaaaaac
tcttcacagccaatgtctggaagtgaaaaagattctcagtccaaagccaatggagagaaa
tcggcctctgctggtgatgaaaattcatcggcaaaaaatcaaggcgcatcaggaaatgaa
tctgccaaaaacggcaaaggatctcgccccaacgatcaatcgttgaaacccaactccgac
aatcctgccagtgcgagtgaccccgctggcgatccctcgggaacggatccatcccaacgt
gctggacagaaaaacaaagcctcagatccatcgatgggcccgcccagcgagaagctcctg
ggcaagtctcaagaggggggcaaggatgacgagatgcctgctcaaagacgccccggtgaa
gatggaacgacgggagacctgaaggccgataacgaacgtcctcagaattcacccgctggt
aaggcagatcctggtgcctccagcccgaagaatgcccccaagagcccagctccaccatct
tctgatgaaatgcctccgtccgatcaacggcctcaagatgcttcggcaggtgaacgaggt
atggatcgacaggcacaaaagacaaacactcccggggaacctttggagcaatctcccaat
caacaaccgtctgcccggccgaatcccgatcctcaggacgttcctgccggaagtggtgag
aagatgcgcggcgaaccagggaaaccgcccaaggccaatcagaaatcacagcaggccgaa
agtggtgaagctggtcaatcatccgccaatccggatggcgcggatggcatggcggaaggg
agtggcaacgacacatcttccgagcgagccaaacccggagaagcgggaagaccaggaacc
agcactgcaaaagagaatggagcaccagccactgggagccagcagaaaccttccggagaa
aaaccaactggttcgaaaacaggatcacagcagaaatcgggaggcaatgaccagccagaa
ggtggtgagccagcggggatgaactcaccggcagatggaaaaaatgggagtcaaccacct
gctaacccggcagatgcaaaagggggggcgtcaaaaacaggtagcgctccagagaattca
ccgccaggcagcagcaaggaaaagacatctggagaaggcaattcgccttccaatccctct
ggtaataaaactccgggcaacaagcctgcaggcaaggaagctgccggtggccagggcgat
aaaggcaaccagagcggtggcaaaggtggccagggtggtgataaaggtcagggtggcgag
aagggccagggcggcgaaggtagcgacgctggccagagtaatggaaaaggtggtgggaaa
ggtggatcgtcaccagcttctggcacgccttccagttccggagcatcatctggcgagcct
tccggtcagtcatcgtcagccactggcggtggtgccggtggtgagatgacaccacggggt
tccgctgacaattcctccaatgccaagggggcatcgggtggaaaggaaggtcgcgagaat
caggcagcaaatggcccagctgcgaatgcaccggccgatcaaaatcaggccaaccctgag
tttgaaaaagaggccgcagagttagtgctcgatcaattggagcggcaactggaacgtggc
caggttgatcagaaactactggatgatctcggctggaatgagcagcagatgcgatcgttt
gcgaagcggatgcgagagcagataaatgccgccaaatcgacagatcccacaccagaagat
ctgttgagaaaacgtcagtttgaagagatgctcgaatcggccaggatttcccgacagaga
gtggaagctcaaggaaaagctgtgccacagcgcgatatcgaccaggccggaagtcgccgt
tcacaggttccggaacaatatcgccagcgatttgaggcctacacacgtggtgttcagaaa
aaatctgcaacacccgcacctccatcgccaacccctgccccgaagccatga
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integrated database retrieval system