Planctopirus limnophila: Plim_2466
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Entry
Plim_2466 CDS
T01225
Name
(GenBank) metal-dependent phosphohydrolase HD sub domain protein
KO
K03698
3'-5' exoribonuclease [EC:3.1.-.-]
Organism
plm
Planctopirus limnophila
Brite
KEGG Orthology (KO) [BR:
plm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
plm03019
]
Plim_2466
Messenger RNA biogenesis [BR:
plm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Plim_2466
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Gene cluster
GFIT
Motif
Pfam:
HD
tRNA_anti-codon
TraI_2
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
ADG68292
UniProt:
D5SPE8
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All DBs
Position
complement(3215745..3216731)
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AA seq
328 aa
AA seq
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MARRLILELKDGDNVDETFLVADRQLRANRNAALYLNVDLRDKSGVINGRMWNVSEESVA
HIQAGQYVRVRGKVQLFQGVLQLILTGAHPIDAATIDPLDFLPETTANIEQLMSRLREHL
LKIESVPLRTLCECCLLDEELMEKYAKAPAGIKAHHAYHGGLLEHVVTLMDLARKVVEVY
PTLDADLLVSGVFWHDIGKIRELSYETSFAYTDEGQLIGHLQIGVEMLSERIRETEQLSG
ERFPEELSWRLKHLILSHHGSYEFGSPRLPMTPEAMALHLLDNLDAKLHEFMRAISEDPH
GESHWTLFLPRLDRKLYKTPTDASKRLE
NT seq
987 nt
NT seq
+upstream
nt +downstream
nt
atggccaggcggctcatacttgaactgaaagatggcgataacgttgatgagacgtttctg
gtggcagatcggcaattgcgtgccaatcgcaatgcagcgctgtatctgaatgtcgatctc
cgcgataaatcgggggtaatcaatggccgcatgtggaacgtctcggaagaatcggtcgca
cacattcaggccggtcagtatgtgcgtgtgcggggaaaagtgcagctttttcagggcgtc
ttgcaattgatcctgacgggagcacacccaatcgatgcagcgacgattgatccgctcgac
tttctgccggaaacgacagcaaatatcgagcagttgatgtcccgcttgcgggaacatctg
ctgaaaatcgagtcggtcccactgagaacgttgtgtgagtgctgcctgctcgatgaagag
ctgatggaaaagtatgccaaggcacccgccggcatcaaggctcatcatgcctaccatggg
ggattactggaacacgtcgtcacgctgatggatctggcccgcaaggtggttgaggtttat
ccgaccctggatgcagatctgctggtctccggggtcttctggcacgatatcggcaagatt
cgcgaactgagttatgaaacgtcctttgcctatacggatgaaggacagttgattgggcat
ctgcagattggtgtcgagatgctttccgagcggatccgcgaaacggaacagctatcggga
gaaaggtttcctgaagaattgtcgtggcgtctcaaacatttgattctgagtcatcatgga
agctatgagtttggcagcccgcgtctaccgatgacacccgaagcaatggcgctccattta
ctagataacctcgatgccaagttgcatgagttcatgcgggcgatttctgaagacccgcat
ggcgaatcgcactggacgctgtttttaccgaggctggatcgcaagctttataaaacaccc
acggatgcttcaaagcgactggagtaa
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