Planctopirus limnophila: Plim_3118
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Entry
Plim_3118 CDS
T01225
Name
(GenBank) tRNA pseudouridine synthase D TruD
KO
K06176
tRNA pseudouridine13 synthase [EC:
5.4.99.27
]
Organism
plm
Planctopirus limnophila
Brite
KEGG Orthology (KO) [BR:
plm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
plm03016
]
Plim_3118
Enzymes [BR:
plm01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.27 tRNA pseudouridine13 synthase
Plim_3118
Transfer RNA biogenesis [BR:
plm03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
Plim_3118
Prokaryotic type
Plim_3118
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruD
Motif
Other DBs
NCBI-ProteinID:
ADG68933
UniProt:
D5SSY2
LinkDB
All DBs
Position
complement(4037357..4038655)
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AA seq
432 aa
AA seq
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MRSLYCCRSLEPTTLLPTPAVAARMKLKCLPEDFQVEELSEFEIQGGNYAVYKLTKTSLG
TPEAIEAILRRWKIKREHISYGGLKDRHAITQQYVTISRGPRRDLNQQNFTLVYQGQTKQ
HFGPTDISGNRFHIVIRDLPRNVAQKYVNLRESLLVDRLPNYFDDQRFGSLGASREFIAQ
PWCAGNYERALWLALAEPNPHDRPDDREEKRILRDNWGNWVDCKAKLAQSSRRSIVTYLC
DHPTNFKNAFALIRVDLRGLFLSAYQSYLWNHILAELIRSKVWHERVYEVGLSAQQVAFC
TSLTMEEQDELSRVKLPLPSARIDLEGSALEAHYENVLRELGIELRELRVKYPRDSFFSK
GERPALIVPHNLQMAMASDEQYAGRYKVTCDFELPRGSYATIVLKRLTLDPTAVSERTHE
AAGSSVAVAEED
NT seq
1299 nt
NT seq
+upstream
nt +downstream
nt
atgcggtcgttatactgttgtcgttcattggaaccaacgacgcttttgcccactccagct
gtggctgcacgcatgaaattgaagtgcctccccgaagatttccaggttgaagaactgagt
gagtttgagattcagggcggtaattatgccgtctataaacttacgaagacatcgctggga
actcccgaagccatcgaagcgattttgcgccgatggaaaatcaagcgagagcacatcagt
tatggtggtctcaaagatcgtcatgcgattacccagcaatatgtgacgatcagtcgtggt
cctaggcgggatttgaatcagcagaactttacgctggtttatcaggggcagacgaagcag
cactttggcccgaccgatatttccggcaatcgctttcacattgtcattcgcgatctgcct
cggaatgtggctcaaaagtatgtgaatctgcgggaatcgctgctggtcgatcggctgccg
aattattttgatgatcagcgatttggctcgctcggtgcgtcgcgggagtttattgctcag
ccttggtgcgcagggaattacgagcgagcgttatggctggcactggccgaaccgaatccg
catgatcggcctgatgatcgcgaagaaaagcgtattcttcgcgacaactggggcaactgg
gtcgattgcaaagccaagctggcccagtcgtcgcgtcgcagtattgtgacttacctgtgt
gatcatcccactaacttcaagaatgctttcgcactcattcgtgtcgatttgcgagggttg
tttctgtcggcttaccagagctatttgtggaatcatattctggcagaattgattcgcagt
aaggtctggcatgagcgggtttacgaagtgggtctttcggctcagcaggtcgccttctgc
acgtcgttgacgatggaagagcaggacgaactgtcacgagtcaaactccctttgccttcc
gcacggattgatctggaaggatcggctctcgaagcgcattatgagaatgttctgcgggaa
ctggggattgagttacgcgaactgcgggtgaagtatccgcgggacagtttcttctccaag
ggagaaaggccggcgctcattgtgccacataatctgcagatggcgatggccagtgatgag
cagtatgcaggtcgatacaaagtgacgtgtgactttgagttgccgcgtggttcgtatgcg
acgattgtgctcaagcgattgaccctcgacccgacggctgtgagtgagcgcacacacgag
gcagccgggagttcggtcgctgtggctgaagaggactaa
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