Planctopirus limnophila: Plim_3334
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Entry
Plim_3334 CDS
T01225
Name
(GenBank) guanine-specific ribonuclease N1 and T1
KO
K01167
ribonuclease T1 [EC:
4.6.1.24
]
Organism
plm
Planctopirus limnophila
Brite
KEGG Orthology (KO) [BR:
plm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
plm03019
]
Plim_3334
03016 Transfer RNA biogenesis [BR:
plm03016
]
Plim_3334
Enzymes [BR:
plm01000
]
4. Lyases
4.6 Phosphorus-oxygen lyases
4.6.1 Phosphorus-oxygen lyases (only sub-subclass identified to date)
4.6.1.24 ribonuclease T1
Plim_3334
Messenger RNA biogenesis [BR:
plm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Plim_3334
Transfer RNA biogenesis [BR:
plm03016
]
Eukaryotic type
3'processing and CCA adding factors
3'processing factors
Plim_3334
Prokaryotic type
Plim_3334
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonuclease
UstYa
Motif
Other DBs
NCBI-ProteinID:
ADG69147
UniProt:
D5SU94
LinkDB
All DBs
Position
complement(4314731..4315402)
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AA seq
223 aa
AA seq
DB search
MPSSRFRMTRTHLVLLIVFVSLSLAWQFVVERQPATSSPPSTIQNPAPATEAESEENHTL
TEASNPANAEVRQGASQSVQQPEALRNSPADASPVIRPNAGNSLGNSKVASPEKSPTPSA
EKRWIVAKQTVKDLQGKVVYRGDIDLTETITRIEAGEKLRFRNDGSVFQNRERRLPTREA
GYYREWVHPTAELDGPGPQRIITGKSGEIYYTADHYGSFKKLK
NT seq
672 nt
NT seq
+upstream
nt +downstream
nt
gtgccttcctcccggttccgcatgactcgcacccatctggtgctcctgatcgttttcgtg
agcttgagtctcgcgtggcagttcgtcgtggagcgacaacctgccacatcgtcgcctcca
tcaacaattcagaatcctgcaccagcgactgaagctgaatccgaagagaatcacaccttg
acggaggcttcgaatccggcaaatgccgaggtccgacaaggtgcctcacagtccgttcag
caaccagaggcattgagaaactctccggctgatgcatctcccgtcatacgaccgaatgca
gggaattcactcgggaattccaaggtcgcttcgcctgagaaatcgcccactccctctgct
gaaaagcgctggattgttgccaagcagacggtcaaggatttgcaggggaaggtggtttat
cgaggtgatattgatctgaccgaaacgatcacccggatcgaagcgggcgagaagctgcgg
tttcgaaatgatggttctgtgtttcaaaatcgcgaacgccggttgccaactcgagaagca
ggttattatcgcgagtgggtgcatcccacagcggaactggatgggcctggccctcagcga
atcattacgggaaaatcgggtgagatttattacactgccgatcattacggcagcttcaag
aagttgaaatag
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