Planctopirus limnophila: Plim_3457
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Entry
Plim_3457 CDS
T01225
Name
(GenBank) UvrD/REP helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
plm
Planctopirus limnophila
Pathway
plm03420
Nucleotide excision repair
plm03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
plm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Plim_3457
03430 Mismatch repair
Plim_3457
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
plm03400
]
Plim_3457
Enzymes [BR:
plm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Plim_3457
DNA repair and recombination proteins [BR:
plm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Plim_3457
MMR (mismatch excision repair)
Other MMR factors
Plim_3457
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
Viral_helicase1
AAA_30
AAA_12
HHH
HHH_5
RecR_HhH
NACHT
AAA_11
DEAD
Motif
Other DBs
NCBI-ProteinID:
ADG69270
UniProt:
D5SUY4
LinkDB
All DBs
Position
complement(4472755..4474857)
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AA seq
700 aa
AA seq
DB search
MTTDSPQTASPPSVPLADLSRWQQDLNPEQRAAAQAGPAPLLIIAGAGTGKTTTLVHRVA
HLIATGIDPGEILLLTFTRRAAAEMIRRVEQLLAVAAKSPGIARIHGRHVVGGTFHAIAT
RHLREFGQYLGLDADFTILDRSDAEDLMNQLRSELDITRQEKRFPLKGTCVEIYSRCVNT
RQPLSLVLKETFPWCAEHEAGLKALFQLFTQRKEEQRILDYDDLLLFWLALLQDSPAVPL
LRQRYKAVLVDEYQDTNALQGEIVRALRPDGQGLTVVGDDAQSIYSFRAATIENILRFDQ
EYPGTNVLTLSQNYRSSPEILAASNLVMSLATEGRKKQLWTNRPPQGKPLLVNCRDDNEQ
STLVAERILELREMGVSLKGQAVLFRASHHSATLEIELSRRNIPFIKFGGLKFVEAAHVK
DAMAMLRLAENPRDIVSALRVLLLLPGIGPKTARQLTERLGSGSSAFEPWREHTPAAATK
IHWPVFVALLRTLVKGGQTTTPLPLQLAQVRQFLAPLLEQKYDHAPARLRDLEQLEIIAA
RYESRSQFLAELTLDPPTSTQDFAQDPLLDEDWITLSTIHSAKGLEWDAVYVLHAADGNI
PADMATRNPREIEEERRLFYVALTRAKTHLQVYHPQRYYFHGKNQSDRHSYSQRTRFLPD
DILTAWQVVTPRIQEPASQTHIANGLTTADVRKKIGRMWE
NT seq
2103 nt
NT seq
+upstream
nt +downstream
nt
atgacaaccgattccccacagacagccagccctccatcagttcctttagcagatctttcc
cgttggcagcaggatctcaatcccgagcaacgggccgctgctcaggctgggccggctcca
ctgctcattattgccggtgccgggacaggcaaaaccacaactctcgtccatcgggtcgct
catttgatcgctacagggatcgaccctggcgaaatcctgctgctgactttcactcgtcga
gcggctgctgaaatgatccgccgggtcgagcaacttctcgcggtggctgcaaagtcgccg
ggcattgcacgcattcatggtcgccatgtcgtcggtgggacgttccatgccattgccacc
agacatctgcgtgaattcggtcagtatctcggactcgacgccgacttcacgattctcgat
cgcagtgacgccgaagatctgatgaaccagcttcgctcagaactcgacatcacacgccag
gaaaagcggtttcctctcaaaggcacctgtgtcgaaatctattcccgctgtgttaatacc
cgtcagcccttaagcctcgttctgaaagagactttcccgtggtgtgccgagcatgaggcc
gggcttaaagccttgtttcaattattcacccagcgaaaggaagagcagcggatcctcgat
tacgacgatctccttcttttctggctggcactcctgcaggatagccctgctgtcccactt
ttaagacagcggtacaaagctgtccttgtcgatgaatatcaggacaccaatgccctgcag
ggcgaaattgtacgggcacttcgtcccgatggtcagggtctgacggtcgtcggagatgac
gcccagtcgatctattcgtttcgagccgccacgattgagaacattctccggttcgatcag
gaatatcccggcaccaacgtccttacgctctcacaaaattatcgcagttctcccgagatt
ctcgcagccagtaatctcgtgatgtcactggcgaccgaaggccgcaaaaagcaactatgg
accaaccgtccaccacaagggaagccgctactcgtcaattgccgcgacgacaatgagcag
agcacactggtcgccgagcgcattctggaactgcgagaaatgggggtttccctcaaagga
caggccgtcctttttcgtgcttcgcatcacagcgccactctcgaaattgaactctctcgc
cgaaatattcccttcatcaagtttggcgggctgaagttcgtcgaagcagctcatgtgaaa
gatgccatggccatgctgaggctggccgaaaatccgcgagacattgtctccgcactgcgt
gtgttattgctgctgcccgggattggccctaaaacggcccgtcaactgacagaacgcctg
ggatcagggagttctgcctttgaaccctggcgcgaacataccccagccgcagcgacgaaa
attcattggccggtctttgtggctctgttacggacgttggtcaaaggtggtcaaaccaca
actcctcttcccctgcaactcgcgcaggttcgccagtttctcgctcccctgttagaacag
aagtacgatcacgcacccgctcgcctgcgcgatcttgaacaactcgaaatcattgccgcc
cggtatgaatcccgcagtcaatttctcgcagaactgactctcgacccacccacttccacg
caggattttgctcaagacccactgctcgatgaagactggatcacactctcaacgattcat
tctgcgaaaggtcttgaatgggatgccgtctatgttctgcatgcggctgacggaaacatc
ccggccgatatggcgacacgcaacccgcgcgaaatcgaagaagagcgccgcctgttttac
gtcgctctcacgcgcgcgaaaacgcatctgcaggtttatcatccacagcgatattacttt
cacggcaagaatcagtcagaccgccacagctactcccagcgcacccgcttcctgccggat
gacattctgacagcctggcaagtcgtcacaccccgcattcaagagcctgcaagtcaaacc
cacatcgccaacggactgacaaccgccgatgtccgcaaaaaaatcggccgcatgtgggaa
taa
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