Planctopirus limnophila: Plim_3728
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Entry
Plim_3728 CDS
T01225
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
plm
Planctopirus limnophila
Pathway
plm03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
plm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Plim_3728
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
plm03400
]
Plim_3728
Enzymes [BR:
plm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Plim_3728
DNA repair and recombination proteins [BR:
plm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Plim_3728
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ADG69540
UniProt:
D5SWE7
LinkDB
All DBs
Position
4790420..4793731
Genome browser
AA seq
1103 aa
AA seq
DB search
MSDSPSLQSLVPRLRQHPGIQAILESLRQGNSGTVDGAWGSSCALTTACVATSTSGPVIA
ILPRARDIEDFAGDLTSFLGQPPLVFPAWESLPSEQSTSDPIHGERLRLLKQLESEAPPQ
LVLTSIAATLQPVPARQSRQKSMRRFRVGDELPLESTSEWLISLGFERVLSIETRGEFSI
HGGIVDLWTADLEHPIRIELFGDEIESIRTFDVESQRKLADLNEIEVSVLDLRRLPQEEM
PTSLDDPFPTEHFSGSWPKNTVVVLVDHADIRHEAQAYLERLGDRRGMFSSESSLQKMLQ
FPSLNIAPLLADGFDTTCHLQVESVERLTGPKTEALRELCTILQPDEHVLLACHNAAAIE
RMQELLDGLEEAQKPRIRLCEGTITRGFRLTWERLVVLSDHELFGRVEVRRTATRSRLET
RAIDSFLDLNEGDLVVHLSHGIGRFLGMQILAKGDQSEEHMHLEFKDGAKLFVPVALIHL
VQKYVGGQKTAPELSKLGGTAWAQKKKRVAEAVTDMAADMLRLQAERELQPGIAFPPDSH
WMEEFEASFPYIETIDQSKAILDIKRDMERPRPMERLICGDVGFGKTEVAMRAAFKAVDG
GKQVAVLVPTTVLAEQHYRSFSSRFAEFPINIGQLSRFRTKTEQKLTLSGLMDGSVDLVI
GTHRLVQSDVHFKDLGLLIIDEEQRFGVEAKERLKKLRTQTDILTLSATPIPRTLHLSLI
GVRDISNLETPPQDRMAIETRICRFDPTLIRQAIVRELNRGGQIYFVHNRVYNIQTMAER
IRSIVPEAQVGVVHGQMNEHEMEEAMLGFVRGDLDVLVATTIIESGLDIPNANTIFINQA
EHYGLAEMHQLRGRVGRYKHRAYCYLMVEEGKILSPQATKRLKAIEEFSELGAGFKISMR
DLEIRGAGNILGTEQSGHIAIVGYELYCQLLENAVRALKREPLKEHRHVDVDLPISAFIP
SEYVPPGRLKIEMYRKLSQVVSMEELRQYETEIKDRFGPVPKPAQRMIDLREIQLLASRW
SIDRIHLEGGYCVFSYRLPRKIEKLAQETPFTLRVVDDRQAHLVLPRGYETGLKLLRLVR
KVLDPAGEFAPRKGEDTAQVAAE
NT seq
3312 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgatagtccctctcttcagtccttagtccccaggcttcgtcagcaccctgggata
caggccattctcgaaagtctgaggcaaggcaacagtggcaccgtcgatggtgcctggggg
tcaagctgcgcactcaccaccgcctgtgtggcgacgtccacatccggccccgtcattgcc
atcctgccccgagcgcgcgacatcgaagatttcgctggcgatctcaccagctttctgggc
cagccaccactggtattccctgcctgggaatcacttcccagcgaacaatcgaccagcgac
ccgattcatggcgaacgcctgcgtctgctcaaacaactcgagagcgaagctcccccccag
ctcgttctgacatcgatagccgccaccctacagcccgttcccgcccggcaatcccgccag
aagtcgatgcgtcgctttcgagtgggggatgaactcccgctcgaatcgacatccgaatgg
ctgatttctttaggcttcgagcgcgtgctttcgatcgaaacccgcggcgaattcagcatt
cacggcgggattgtcgatctctggacagccgacctcgaacatcccatccgtattgaactc
tttggcgatgagatcgaatcgatccgcacgttcgatgtcgaatctcagcgaaaactggca
gatctgaatgagatcgaagtgagtgtgctcgatcttcgccgcttgccgcaggaggagatg
cccacatcgctcgacgatccctttccgaccgaacatttctccggcagctggccgaaaaac
acggttgtcgtcctcgtcgatcatgccgatatccgtcacgaagcccaggcgtatctcgaa
cgattgggcgaccgtcgcggcatgttttccagcgaatcatcgctgcagaagatgctgcag
ttcccttcgctgaatatcgcaccattactcgccgatggttttgatacgacctgtcatctg
caggttgaatcggtcgagaggctcaccggccccaaaaccgaagccctacgagaactctgc
accattctgcagcccgatgagcatgtcctcctggcttgtcataatgccgccgccatcgag
cgcatgcaggaactcctggatggcctcgaggaagcacaaaaaccccgcattcgcctgtgc
gaagggaccattacgcgtggcttccgcctcacctgggagcggctggttgtcctttccgat
cacgaactgtttggccgggtcgaggtccggcggactgccactcgcagcagactcgaaaca
cgcgccatcgacagcttcctcgacctcaacgagggagatctggtcgtgcatctgtcgcat
ggcatcgggcgatttctcgggatgcagattctcgccaaaggggatcagtccgaagagcac
atgcacctcgaattcaaggatggtgccaaactctttgtccctgtcgcgctgatccatctg
gtgcagaagtatgtcggcgggcagaaaacggctcccgaactttccaagctgggcggaacc
gcctgggctcaaaagaaaaaacgcgtcgcggaagccgtcaccgatatggcggctgacatg
ctccgcctgcaagccgaacgagaattgcagccgggcattgccttccccccggacagccac
tggatggaagagttcgaggcctcgtttccttacatcgaaacgatcgatcagtcaaaagcc
attctcgatatcaaacgcgatatggaacgcccccggcctatggaaaggctcatttgcggc
gatgtcggctttggtaaaaccgaagtcgccatgcgcgctgccttcaaagcagttgatggc
ggcaagcaggtcgccgtcctggtccccacgacagtcctggcagaacagcattatcgcagc
ttcagcagccgctttgctgagttcccgatcaacattggtcagctttcccgcttccgcacg
aagaccgagcagaagctgacacttagcgggttgatggatggctcggtggatctcgtcatt
ggtacgcatcgactggttcaatccgatgtccacttcaaagatctcggcctgctgatcatt
gatgaagagcagcgatttggtgtagaagcgaaagagcggctcaaaaagctgcgcactcag
accgatattctcacgttgagtgcgacacccatcccgcgaacattgcatctctcgctcatt
ggtgtacgcgatatctcgaatctcgaaactccaccacaagatcgcatggcgattgaaact
cgcatctgccggtttgatccgacccttatccggcaggcgatcgttcgcgaactcaatcga
ggcgggcagatctacttcgtccataaccgcgtttacaacattcagacgatggccgagcgt
attcgttcgattgtgcccgaagcgcaggtcggtgtggtgcatggccagatgaacgaacac
gaaatggaagaggcgatgctcggattcgtccgtggcgatctcgatgtcctcgtggcaacc
acaatcatcgaaagtggcctcgatatccccaatgcgaacacgattttcatcaatcaggcc
gagcattatggccttgcggaaatgcaccagcttcgcggccgcgtgggccgatacaaacac
cgcgcctattgctacctgatggtcgaagaagggaaaatcctctcacctcaagccaccaaa
cggctcaaggcgattgaagaattcagcgagctgggtgctggttttaaaatctcgatgcgt
gatctcgaaatccgcggggccgggaatatcctcgggacggaacagagcgggcatatcgcc
atcgtgggttatgaactctactgccagcttcttgaaaatgccgtccgtgctctcaaacgg
gaacctctcaaagaacatcggcatgtcgatgtcgatctccccatctcggcattcatcccc
agtgaatacgttccgccgggccgattaaagatcgagatgtatcggaagctgtcgcaggtc
gtttcgatggaagaactgcgtcagtacgaaaccgagatcaaggatcgctttggcccggtt
cccaagcctgcccagcggatgatcgacctgcgggaaattcagctcctggccagccgatgg
tcgattgatcgaattcacctcgaagggggctactgtgtcttcagttatcgcctccctcgc
aaaatcgaaaagctggctcaggaaacccctttcacacttcgggtcgtcgatgaccgccag
gcgcatctcgttcttccccgtggctacgagaccggcctcaagctgctcaggctcgttcgc
aaagtgctcgatcccgcgggggaatttgctccccgcaaaggagaagacacggcacaggtt
gccgccgagtaa
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