Planctopirus limnophila: Plim_3906
Help
Entry
Plim_3906 CDS
T01225
Name
(GenBank) helix-turn-helix-domain containing protein AraC type
KO
K02529
LacI family transcriptional regulator, galactose operon repressor
Organism
plm
Planctopirus limnophila
Brite
KEGG Orthology (KO) [BR:
plm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
plm03000
]
Plim_3906
Transcription factors [BR:
plm03000
]
Prokaryotic type
Helix-turn-helix
LacI family
Plim_3906
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peripla_BP_3
HTH_18
HTH_AraC
PBP1_XylR
Motif
Other DBs
NCBI-ProteinID:
ADG69717
UniProt:
D5SX95
LinkDB
All DBs
Position
complement(5020019..5021248)
Genome browser
AA seq
409 aa
AA seq
DB search
MSQEAPASQDSSEISPRPATLPVSAMPPTMHRSVALIVHTSSDWTRQVLRGIAQYASEHG
FWDFFIEPRGHDEKLLIPKGWSGDGIIARLTHPALEKQILKSNLPCVNVSWMGQHSLRIP
KVVSDEAACGRLAAEHFLEQSFRSFAYIGPIHRAGYDDLLGKNYINTLLQAGHQTSIYQP
TVPIPVPDLLTQRKGFLQWLKMLPKPTAIFTWSGEVGRELMTCARLSRFRIPDDIALLVG
ENDPLLSALAPVPLSNIDQAPVRVGYEAATLLDKLMNGEPAPEEPILVPPVGVVQRRSTE
TSAVDDPLVDMAVRFMRDHLSEPIQIADVEKALNVSRRVLEHRFHKVLDDTPANVLRRMR
LQNVKRLLGETTLPLARIAQLTGFNHVEVLVRTFRRELGVTPGEYRRRH
NT seq
1230 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcaagaagcccccgcttcccaggattcgtccgaaatttctccgcgtccagcgaca
ttgccggtatcggccatgccacccaccatgcatcgcagtgtggcactcatcgtccatacc
tcatctgactggacgaggcaggtcttgcgcgggattgcccagtatgccagcgagcacggc
ttctgggatttcttcatcgagccacgcggtcacgacgaaaaactgctgattcccaagggc
tggagtggtgatggcattattgcccgcctcactcaccccgcactcgaaaagcagatcctc
aaaagcaacctgccctgcgtcaacgtctcctggatgggacagcactccctccggatcccc
aaagtcgtctccgatgaagcggcttgcggaaggctcgctgccgaacatttcctcgaacaa
tccttccgcagcttcgcctacatcgggccgattcatcgtgcgggatatgacgatctgctg
gggaaaaactacatcaatacgctattgcaagccggtcatcagaccagcatttatcagccc
acagttcccattcctgtccctgaccttttaactcaacgaaaaggttttctgcagtggctg
aaaatgctccccaagccaacggcaatcttcacctggagtggtgaagtgggccgcgagtta
atgacctgtgcccgcctcagccgctttcggattcccgacgatatcgccctgctcgttggt
gaaaacgatccactgttgtcagctctggcaccagtcccgctttccaatatcgaccaggct
cctgtccgtgtcggttacgaagcagcgactttgctcgacaaactcatgaatggcgaacca
gcaccggaagagccgattcttgtcccccctgtcggtgtggtgcagcgccgatccacggaa
acatcggctgtcgatgatcctctggtcgatatggccgttcgttttatgcgcgaccatttg
agcgaaccgattcagattgcggatgtggagaaagctctcaatgtctcccgccgggtgctg
gaacaccgcttccataaagtgctcgacgataccccagccaatgtccttcgcaggatgaga
ttgcagaacgtcaaacgcctcctgggagaaaccactcttccactggcccgcattgcccag
ctcactggctttaatcacgtggaagttctggtgcgtaccttccgccgtgagctgggggtc
actcccggcgaataccggcgtcgccactaa
DBGET
integrated database retrieval system
