Planococcus sp. PAMC 21323: Plano_0429
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Entry
Plano_0429 CDS
T03510
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pln
Planococcus sp. PAMC 21323
Pathway
pln03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pln00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Plano_0429
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pln03019
]
Plano_0429
03009 Ribosome biogenesis [BR:
pln03009
]
Plano_0429
Enzymes [BR:
pln01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Plano_0429
Messenger RNA biogenesis [BR:
pln03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Plano_0429
Ribosome biogenesis [BR:
pln03009
]
Prokaryotic type
rRNA helicases
Plano_0429
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
GRP
Helicase_RecD
NDK
Motif
Other DBs
NCBI-ProteinID:
AIY04394
UniProt:
A0A0B4R8B4
LinkDB
All DBs
Position
408692..410209
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AA seq
505 aa
AA seq
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MVKFSELNISETTLKSVKRMGFEEATPIQEGTIRLGMEGKDIIGQAQTGTGKTTAFGIPL
IEKIDTKDGNVQGLIIAPTRELAIQVSEELYRLGQDKNVRILSVYGGQEISRQIRALKNR
PQIIVGTPGRLLDHINRRTLKLDNVNTLILDEADEMLNMGFIEDIQTIMASVPDTRQTLL
FSATMPDAIRRIAEKFMKTPEIVKIKSKEMTVENIEQFYVKSVEREKFDFLSRLLNVQQP
ELAIVFGRTKRRVDELAKALNIRGYLAEGIHGDLSQAKRMSVLKQFKAGKIDILVATDVA
ARGLDISGVSHVYNFDIPQDPESYVHRIGRTGRAGKKGVAVTFVTPREMGYLAIVERTTK
KKMEALVPPTANEAVLGQKRVAMEQLLEMTEKNNLGDYREFATQMLDKHDAVDLIAAALK
TMTKEPEDIPVSISEERPLPSRGGGGYKGKGGGGRSSGGGGYKGNRSSGSARPSSSRGAS
SGASRRREGGSGGGRPGRTTRRSES
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
ttggtaaaattttcagagttaaatattagcgaaacaactttaaagtccgtaaaacgtatg
gggtttgaagaagcaacaccaattcaagagggaacaatccgtcttggtatggaaggtaaa
gacatcatcggacaagcgcaaactggtactggtaaaactactgctttcggtattcctttg
attgaaaaaatcgacactaaagacggtaacgttcaaggattaatcatcgcaccaacacgc
gaattggcaatccaagtttcagaagaactttacagactgggtcaagataaaaacgtacgt
attctttcagtatacggtggccaagaaattagccgacaaatccgtgcactaaaaaaccgt
ccacaaattatcgttggtactccaggacgtctattagaccatatcaaccgtcgtacgctt
aaattggataatgtaaacacattgatccttgatgaagcagacgaaatgttgaacatgggc
tttatcgaagacattcaaacaattatggcaagtgttcctgatactcgtcaaacattgttg
ttctcagcaactatgccggatgcaatccgtcgcattgcagagaaattcatgaaaactcca
gaaatcgttaaaatcaaatcaaaagaaatgactgttgaaaacattgagcagttctatgtg
aaatctgtagagcgcgagaaatttgatttcctttcacgtcttttgaatgttcaacaaccg
gaacttgcgatcgttttcggacgtacaaaacgccgtgttgacgaattagcaaaagcttta
aatatccgcggctaccttgctgaaggtattcatggtgacttaagccaagcaaaacgtatg
tcagttttaaagcaatttaaagcaggcaaaattgatattttagttgcaacagatgtagca
gctcgcggacttgatatctcaggcgtatcacacgtatacaactttgatattccacaagat
cctgaaagctatgttcaccgtatcggtcgtactggtcgtgcaggtaaaaaaggagtcgct
gtcacgtttgtgacaccacgtgaaatgggctacttagctatcgttgaacgcacaactaag
aaaaaaatggaagcattggttcctccaactgcgaacgaagctgtacttggccaaaaacgc
gttgctatggaacaattgcttgaaatgacagagaaaaacaatcttggcgattaccgcgaa
ttcgcgacgcaaatgcttgataagcatgatgcggttgacttgattgcagcagctcttaaa
acaatgactaaagaaccggaagatattccagtttctatttccgaagaacgtcctttgcca
tcacgcggaggcggcggatataaaggtaaaggcggcggcggacgcagttctggaggcggc
ggttacaaaggtaatcgttcatcaggatcagctcgtccatcatcaagccgtggagcaagc
tcaggcgcaagccgacgtcgtgaaggcggaagcggtggcggacgtccaggacgtacgact
cgccgtagcgaatcttaa
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