Planococcus sp. PAMC 21323: Plano_0442
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Entry
Plano_0442 CDS
T03510
Name
(GenBank) RNA polymerase sigma factor SigB
KO
K03090
RNA polymerase sigma-B factor
Organism
pln
Planococcus sp. PAMC 21323
Brite
KEGG Orthology (KO) [BR:
pln00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pln03021
]
Plano_0442
Transcription machinery [BR:
pln03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Plano_0442
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r3
Sigma70_r4_2
DUF1492
HTH_37
GerE
HTH_23
DUF134
HTH_3
HNF-1_N
Sigma70_ECF
HTH_28
KORA
Motif
Other DBs
NCBI-ProteinID:
AIY04407
LinkDB
All DBs
Position
418921..419703
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AA seq
260 aa
AA seq
DB search
MSKQSHPNQPTKEQVLDWIEAYQKTEDEEAQTNLVLNYKRLVESIARKYSNGKSYHEDIA
QVGMLGLLGAIRRYDPSFGRSFEAFAVPTIIGEIKRFLRDKTWAIHVPRRIKELGPRIKA
TVEVLTRELQRSPQVWEIAEYLDVEEDDILEAMEMGKSYQALSMDHSLEADSDGSTITLF
DVVGQEDDGYEKADQRMLVAEAMNVLSEREKQIIQFTYIDQLSQKEAGDKLGISQMHVSR
LQRKAIKKLQEAILAAGGVS
NT seq
783 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaaacagtctcatcctaatcagcctactaaagagcaggtgcttgattggattgaa
gcttatcagaaaacagaagatgaagaagcccaaacaaacttggtgttaaattataaacgc
cttgtcgaatccattgcccgaaaatattcgaatgggaaatcttatcatgaagatatagcg
caagtaggcatgctcggacttttaggagctattagacgctatgatccatcgttcggtcgt
agttttgaagcttttgctgtgcctacaattattggagagattaaacgattcttgcgtgac
aaaacgtgggcaatccatgttccgcgtcgcataaaggaactaggtcctcggataaaagcg
acggttgaagtactaacaagagaacttcagcgctcgccacaagtatgggaaatcgctgaa
tatctagacgttgaagaagacgatatattggaagcaatggagatgggcaaaagctatcaa
gcactttcaatggatcattctttagaggcagattcagacggtagcacaattactttattt
gatgtagttggccaggaagacgatggatatgagaaagcggatcaacgcatgcttgtagct
gaagcgatgaatgtgctttctgaacgcgaaaagcaaatcatccaattcacctacatagac
cagttgagtcagaaagaggctggggataaactcggcatttctcagatgcatgtttctcgc
ttacaaagaaaagcgattaaaaaacttcaagaagcaattttagcagctggcggagtatcc
tag
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