Planococcus sp. PAMC 21323: Plano_0916
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Entry
Plano_0916 CDS
T03510
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
pln
Planococcus sp. PAMC 21323
Pathway
pln03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pln00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Plano_0916
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pln03019
]
Plano_0916
03016 Transfer RNA biogenesis [BR:
pln03016
]
Plano_0916
Enzymes [BR:
pln01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Plano_0916
Messenger RNA biogenesis [BR:
pln03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Plano_0916
Transfer RNA biogenesis [BR:
pln03016
]
Prokaryotic type
tRNA degradation factors
Plano_0916
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
S1CSD-TOTE-2
CSD
S1_RRP5
OB_Dis3
Glyco_H_20C_C
CsrA
Motif
Other DBs
NCBI-ProteinID:
AIY04881
LinkDB
All DBs
Position
945440..947764
Genome browser
AA seq
774 aa
AA seq
DB search
MGNPEKSLEQRLIAFMREEAYKPLTVQEIEEQFGFEDADEFTELVKTLVRLEESGTLIRS
RSNRYGVPERMNLMRGKFIGHPKGFGFVAPEEAGLDDVFIPPTEVNSAINGDTVLIRISE
GSSGDRREGAIIRIIERGTTKAVGTFQENKGFGFVVTDDKKMNMDIFIAKDDTLGAVDGH
KVVVEITGWPEGRMSATGMVTQILGHKNDPGVDILSIIHKYGIETEFPPDVLDQANNVPD
EIDPADLNDRRDLRNEQIVTIDGADAKDLDDAVQVVKYEDGSYKLGVHIADVSHYMTEGS
AMDREAYDRATSIYLTDRVIPMIPHRLSNGICSLNPQVDRLTLSCEMIFNDQGEVQSHDI
FQSVINTSARMTYTDVYEILEQDNQELKEQYRELVPMFELMKELAEVLRTKRMRRGAIDF
DFKESKVLVDENGYPVDVVIRERTVAERLIEEFMLAANETVAERFHNMEVPAIYRIHEDP
KPEKLQRFFEFVTNFGIVVKGSGTKIHPRALQEIVESIAGTPEEPVVSTMMLRSMQQAKY
SAESLGHFGLSTEFYTHFTSPIRRYPDLIVHRLIRTYLIEKDLSKKTIAYWDANMDDIAT
HTSERERRAVEAERDTDALKKSQYMADKIGEQFTGIISSVTNFGLFIELPNTIEGLVHVS
NMTDDYYRFDDRSMMMIGERTNRQFRIGDEIEIKVIGVKPEESSIDFEIVGMVQTPRRTR
KDQPKVIRANKKDGAGKPGRDGKKPESGGPTRKPKNKKKKFYENVAKQGRNKKK
NT seq
2325 nt
NT seq
+upstream
nt +downstream
nt
ttggggaatcccgaaaaatcattagaacagcgcttaatcgcttttatgcgtgaagaggct
tataagccgctaactgtacaagaaatagaagaacaattcggttttgaagatgcagatgag
tttacagaattagtgaagacattagtgagattagaagaatcaggtactctaatccgttca
agatcaaaccgttatggagtaccagaacgaatgaatttaatgcgcggaaaattcattgga
catccaaaaggctttggatttgttgcacctgaagaagcaggattagacgatgtatttatc
ccaccaaccgaagttaatagcgcaatcaatggagataccgtgttaatccgtatttctgaa
gggtcttcaggtgatcgtcgtgaaggtgccattatccggattattgaacgcggaacgact
aaagcagttggaacgttccaagaaaataaaggctttggatttgtcgtaacagatgacaaa
aaaatgaacatggacatctttatcgcaaaagacgatacgttaggcgctgtagatggacat
aaagttgttgtagagattacaggatggccagaaggtagaatgtctgcgacaggtatggta
acgcaaattcttggacacaaaaatgatccaggtgtcgatatcctttctattatccataag
tatgggattgaaacagagtttccaccagatgttctagaccaagcaaataatgtgccggac
gaaatcgatccagcagatttaaacgaccgtcgcgatttacgcaacgaacaaattgtgacg
atcgatggagctgacgctaaagatttagatgatgcggtacaagtcgtaaagtacgaagat
ggttcatacaaactaggcgtacacattgctgacgttagtcattatatgactgaaggatct
gcaatggatcgtgaagcatatgaccgtgcgacaagtatttatttgacagatcgtgtaatt
ccgatgattccacatcgtttgtcgaacgggatttgttcattaaatccacaagtagaccgt
ttaacactatcatgtgaaatgattttcaatgaccaaggtgaagtgcaatcacatgatatt
ttccaaagtgtcattaacacatcagctcgtatgacatatacggacgtatatgaaatttta
gagcaagacaatcaagaactaaaagagcaatatcgtgaactcgtgccgatgttcgaattg
atgaaagaattagcagaagtgcttcgcacaaaacggatgcgtcgtggagctattgatttt
gactttaaagagtcaaaagtattagtcgacgaaaatggttacccagtagacgtggtcatt
cgtgaacgtacagttgctgaacgattaatcgaggaatttatgctagcagccaatgaaacg
gtagccgagcgttttcacaacatggaagtaccagcaatttaccgaattcacgaagatcca
aaaccagaaaaattacaacgcttttttgaatttgtaacgaactttggaattgtcgtaaaa
ggatctggcactaagattcacccgcgagctttgcaagaaatcgttgaatcgattgctgga
acaccagaagaacctgttgtttccacaatgatgttacgttcaatgcaacaagcgaaatac
tcagcagagagtttaggtcattttggcttatcaactgagttttatacgcattttacatca
ccgattcgtcgctatcccgatttaatcgtgcatcgcttgattcgcacctatttaatcgaa
aaagacttatcgaagaaaacaattgcttattgggatgccaatatggatgatattgcaacg
catacatcagaacgagaacgccgtgcagtagaagccgagcgcgatacggatgcgttgaag
aaatctcaatacatggctgataaaatcggcgaacaattcacaggaattatatcttcagtg
acgaatttcggtttgtttattgagctgccgaatacgattgaaggtttggttcacgtgtct
aatatgacagatgattattatcgctttgacgatcgtagcatgatgatgattggagagcga
acaaatcgtcaattccgcattggtgacgagattgaaattaaagtcatcggtgtcaaacca
gaagaatcatcgattgattttgaaattgttggcatggtgcaaacacctcgcagaacgaga
aaagatcagccgaaagtaattcgtgccaataaaaaagatggcgctggaaaaccaggacgt
gatgggaaaaaaccagaaagcggcggacctacacgtaaaccaaaaaacaaaaagaaaaag
ttttacgaaaatgtagcaaaacaaggacgtaataagaaaaaataa
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