Planococcus sp. PAMC 21323: Plano_1287
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Entry
Plano_1287 CDS
T03510
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
pln
Planococcus sp. PAMC 21323
Pathway
pln02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pln00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Plano_1287
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pln03021
]
Plano_1287
Transcription machinery [BR:
pln03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Plano_1287
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r1_1
Exonuc_VII_L
DUF2408
Drf_FH3
Motif
Other DBs
NCBI-ProteinID:
AIY05252
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All DBs
Position
1322925..1324079
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AA seq
384 aa
AA seq
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MAEKSERQTEVEASNVPLTTEGPEATVEEAKKQLIEAGKKTGELNYEQIADKLAVFEMES
DAVEEFIDQLEGHGIELERKSDDEEHLDRLMKPTEDKFDLNDLSVPPGVKINDPVRMYLK
EIGRVDLLKAEEEVRLAKLIEQGDEEAKKRLAEANLRLVVSIAKRYVGRGMLFLDLIQEG
NMGLIKAVEKFDYSKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQR
QLLQDLGRDPSPEEIGEEMDLLPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDSDA
QSPSDHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIR
QIEAKALRKLRHPSRSKRLKDFLE
NT seq
1155 nt
NT seq
+upstream
nt +downstream
nt
atggctgagaaatctgaacgccaaactgaagttgaagcaagcaatgttccattgactact
gaaggtccggaagcaactgttgaagaagcgaaaaaacagctaattgaagcaggtaaaaaa
accggagaactcaattacgagcaaattgctgacaaattagcggttttcgaaatggaatcc
gatgcagttgaagagtttatcgatcaattagaaggacacggcatcgaattggagcgtaaa
tccgacgatgaagagcatttagaccgtcttatgaaaccaactgaagataaattcgattta
aatgatttaagtgttccacctggcgttaaaattaatgatcctgtccgtatgtacttgaaa
gaaattggacgtgtggatttattaaaagctgaagaagaagtgcgtttagcaaaattgatc
gaacaaggtgacgaagaagcgaaaaaacgccttgcagaagccaatttacgtttagtagta
agtattgcaaaacgatatgttggacgtggaatgttgttcttggatttaatccaagaaggg
aacatgggcttgatcaaagctgttgagaaatttgactactctaaaggattcaagtttagt
acgtatgcaacttggtggattcgtcaagcaattactcgcgcgatcgctgaccaagcccgg
actattcgtattccagttcatatggttgaaacgattaacaaactgattcgtgtacagcgt
cagctgttgcaagatcttggccgtgatccttctccggaagaaattggagaagaaatggat
ttacttcccgaaaaagttcgtgaaatcttgaaaattgctcaagagcccgtatcacttgaa
acgcctatcggtgaagaagatgactcgcacttaggtgactttattgaagattcagatgca
caatcaccatctgatcatgctgcttacgaattgttgaaagaacagttagaagatgttttg
gacacattaactgaccgcgaagaaaacgtattgcgtttacgtttcggtttagatgatggt
cgtacgcgaacattagaagaagtaggcaaagtatttggcgtaacacgtgaacgtattcgt
caaatcgaggcaaaagctctacgcaaactgcgtcatccatctcgtagcaaacgtttaaaa
gattttcttgaataa
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