Planococcus sp. PAMC 21323: Plano_3067
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Entry
Plano_3067 CDS
T03510
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pln
Planococcus sp. PAMC 21323
Pathway
pln03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pln00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Plano_3067
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pln03400
]
Plano_3067
Enzymes [BR:
pln01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Plano_3067
DNA repair and recombination proteins [BR:
pln03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Plano_3067
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
MFD_D3
Cas3-like_C_2
RecG_dom3_C
SecA_DEAD
IstB_IS21
Motif
Other DBs
NCBI-ProteinID:
AIY07032
UniProt:
A0A0B4RH44
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All DBs
Position
3164668..3168201
Genome browser
AA seq
1177 aa
AA seq
DB search
MNHILQIFSEDTQTQRFMDDLKKGNDHQLISGLSGSARPIFYQTIWTELEEPLLIVTPNL
LHAQRVYDDLVRLVGEEQVHLYPAEELIAAEVSFSGPELRAHRIDTLDHMKSVGKGIYIT
PVAGMRKLLPTKEQWDYANLRIAEGEELDTNEWLLKLVAMGYSRTPMVTTPGEFALRGGI
LDIYPLNFEHPVRIELFDTEVDSLRLFSAEDQRSLEKVQSLCILPASELVLSPDQRTQLA
EKLEVQLASSLKKIKADDTKALMLQHIQHDIDLLKQGETPEQLAKYASLIDTQSAFLGDY
FPGNGLVFFDELGRIQEMTDTLEREEGDWIVSLLEEGKFVHDVPLTYTFREMMSKLQHKV
TFLSLFVRTFPMVSIKKSLAFSCKPMQSFHGQMHLLKAEMERWTSGKSQIFIVAQGDERL
EKVRSVLADYDMEAVIATPSTEIQGGQIYLLDGELSTGFEMPLQRLAVITDSELFKQQPK
KKTRAQKLTNAERIKSYSEIKPGDYIVHIHHGIGRFIGIETLESGGVHKDYLHIVYKADD
KLFVPVDKIDLIQKYIASEEKEPKLHKMGGAEWKKTRTKVSAAVQDIADDLIKLYAEREA
LRGFAFSEEQDMQRQFEAEFPYEETTDQLRSINEVKRDMENERPMDRLICGDVGYGKTEV
AIRAAFKAVLDGKQVAFLVPTTILAQQHFETMSERFKDYPITVGLMSRFRSKKQQTETVK
GLKNGSVDVVIGTHRILSKDMQYKDLGLLIIDEEQRFGVTHKEKIKQMKTNVDVLTLTAT
PIPRTLHMSMIGVRDLSVIETPPANRFPVQSYVMEHNGALVREAIEREMARGGQVFYLYN
RVDDMTRKVEEIQQLVPEARVGYAHGQMSETELESVILSFLDGDYDVLVTTTIIETGIDI
PNVNTLIVYNADRMGLSQLYQLRGRVGRSSRVAYAYFMYQRDKVLTDVAEKRLMAIKEFT
ELGSGFKIAMRDLTIRGAGNLLGSQQHGFIDSVGFDLYSQMLQEAIDERQTGVKKEVIPE
IEISLDVDAYIPDAYISDGYQKIQMYKRVKGVETEEEMRELQDELIDRFGDMPTETDSLL
RIARMKVWAREVGVESIKQNGKMVSVRLSEKGTASINGGKVVEESAAYGRAVGFSMSGQQ
LVMTIDENKTKKQHPFDVLEGMMKLLPESLREEKSAL
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atgaatcatattttacagattttttcggaggatacacagacacaacgatttatggacgat
ttaaaaaaaggaaacgaccatcagttgatttccggtttatccggcagcgcaagaccaatt
ttctatcaaacgatttggaccgaattagaagaacctttattgattgtgacacccaattta
ttgcatgcacagcgtgtgtacgatgatttggttcgtctagtaggagaagaacaagttcac
ctttatcccgcagaagaactaatcgcagcagaggtatcgttttccggtccagaattaagg
gctcaccgcattgacacccttgatcatatgaagagtgtcggtaaaggtatttacattaca
ccagttgcaggcatgcgcaagttattgccaacaaaagagcaatgggattatgctaatttg
cgaattgcagaaggcgaagaacttgatacaaatgaatggctgttaaaattggtagcaatg
ggatactcgcgtacgccaatggtcaccacacccggtgaatttgcgcttcgtggaggcatt
ttagatatttatccactgaattttgaacatcccgtgcgcatcgaattattcgatacggaa
gtggattcgttgcgcttgttttcagcggaagatcaacgttcactcgaaaaagtccaatcg
ctctgtattttgccagccagtgaattggtactgtccccggatcaacgaactcaattggcg
gaaaagctggaagttcaattggcttctagtttgaaaaaaatcaaagctgacgatacgaaa
gccttaatgcttcaacatattcagcatgacatcgatttattgaagcaaggagaaactcct
gaacaattagcgaagtacgcttcattaattgatacacaatcagcatttttgggtgattat
ttcccggggaatggactggtcttttttgatgagctcggacgaattcaagaaatgacggat
actctggaacgtgaagaaggcgattggattgtttcacttcttgaagaggggaaatttgtt
cacgatgtgccgttaacgtatacgttccgcgaaatgatgtcgaagttgcagcataaagtc
acttttttatccctattcgttcggacgttccccatggtatctatcaaaaagtcattggct
ttttcctgcaagccgatgcaatcttttcatgggcaaatgcatttactaaaagctgaaatg
gagcgctggacgtcagggaagtcgcaaatttttatcgttgcacagggagatgagcgtcta
gaaaaagttcgttcagtgttagcagattacgatatggaggctgtgattgccaccccttca
actgaaatacaaggcgggcaaatttatttgcttgatggggaattgtcaacgggctttgaa
atgccgttgcagcgactagccgtcattacagactctgaattgtttaagcaacagccaaaa
aagaaaacacgtgcacaaaaactaacaaatgctgagcgtattaagagctactcagagatt
aagccaggggattacattgtacatatccaccacgggattggtcgctttataggcattgaa
acgcttgaaagcggaggcgttcataaagattatttgcatatcgtttataaagctgacgat
aaattatttgtaccggtcgataaaattgatttgatacaaaagtacattgcctctgaagaa
aaagaaccaaaactgcataaaatgggcggcgcagaatggaagaaaacacgtacaaaagtt
tctgcagcggtccaagacattgcagatgatttgatcaagctatatgccgaacgcgaagca
ttgagaggctttgccttttccgaagagcaagatatgcaacgacaatttgaagccgagttt
ccatatgaagaaacaaccgatcaattgcgctcgattaacgaagtaaagcgcgacatggaa
aatgaacgaccgatggaccgccttatatgcggagatgttggctatgggaaaacagaagtt
gccattcgtgcagcatttaaagcagtactcgacggcaaacaagtagcatttcttgtacca
accacaattttggcgcagcaacactttgaaaccatgagtgaacgatttaaagattaccca
ataacggtcggattaatgagtcgcttccgctctaaaaagcagcaaacagaaaccgttaaa
gggttgaaaaatggctcggttgatgttgtcatcggcacgcatcgtattttatcgaaggat
atgcaatacaaggatctaggattattaattatcgatgaagaacagcgctttggtgttact
cataaagaaaaaatcaaacagatgaagacaaacgtagatgtcttgacgttaacagcgacg
ccaatcccccgtacgcttcatatgtcgatgattggtgtgcgcgatttgtccgtaatcgaa
acaccaccagcaaaccgttttcctgtccaaagctacgtgatggaacataacggtgcgctc
gttcgcgaagccattgaacgtgaaatggcgcgaggtggacaagtcttttatttgtataac
cgtgtggatgatatgacgcggaaagtagaagaaattcaacaattggttcctgaagcacgc
gttggttatgctcatgggcaaatgagtgaaacggaattggaatcagttatcttgagtttt
cttgatggcgattacgatgttttagtgacaacgacaattatcgaaaccggcattgatatt
ccaaacgtaaatacattgattgtctataatgccgatcgcatgggattgtcacagctgtat
caattgcgtgggcgtgttggacgttcgagtcgtgtggcgtatgcatactttatgtaccag
cgtgacaaagtgttaaccgacgttgccgaaaaacgattgatggcgatcaaagaattcaca
gagcttggttctggttttaaaattgctatgcgcgatttaaccatacgcggagcgggtaat
ttactcgggtcacaacaacatggctttattgattcagtcggttttgatttgtattcgcaa
atgctgcaagaagcaattgatgaacgtcaaactggcgttaaaaaagaagtaataccggaa
attgaaatttcactcgatgtagatgcttatattccagatgcctatattagtgacggttac
caaaagattcaaatgtacaagcgcgttaaaggcgttgaaacagaagaagaaatgcgtgaa
ttgcaagatgaattgatcgatcgtttcggagatatgccgactgaaacggatagtttattg
cgcattgcgcgtatgaaagtgtgggcgcgcgaagtcggggtagaatcgattaaacaaaat
ggcaaaatggtttctgttcgcttaagcgaaaaaggcacagcgagtattaacggcggaaaa
gtggtcgaagaatctgccgcttatggccgtgctgttggatttagtatgtctggtcagcaa
ttggtcatgaccattgatgaaaataaaaccaaaaagcagcacccgtttgatgttcttgaa
ggtatgatgaaattactgccagaatcgttgcgtgaagaaaagtcagctttgtaa
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