Candidatus Portiera aleyrodidarum BT-QVLC: C548_062
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Entry
C548_062 CDS
T02307
Name
(GenBank) DNA-directed RNA polymerase beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
plo
Candidatus Portiera aleyrodidarum BT-QVLC
Pathway
plo03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
plo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
C548_062
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
plo03021
]
C548_062
03400 DNA repair and recombination proteins [BR:
plo03400
]
C548_062
Enzymes [BR:
plo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
C548_062
Transcription machinery [BR:
plo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
C548_062
DNA repair and recombination proteins [BR:
plo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
C548_062
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
Motif
Other DBs
NCBI-ProteinID:
AFT80428
LinkDB
All DBs
Position
79381..83448
Genome browser
AA seq
1355 aa
AA seq
DB search
MGSSYTKKTNIRKIFGKIPQIMEVPYLLSIQIESYKNFLKKKTNIGINAALNSIFPIKSL
SGKALLEYVDYNLMKPVFDVKECKIRGMTYYSNLRVKMRLVIFDEIEKQRIIKYVKEQEV
YMGDIPLITKTGTFVINGTERVVVSQLHRSPGLFFDNDHNKNYSIGKLIATARIIPYRGS
WFDFEFDQRDNIFVRIDRRKRIPVTVLLRALGLNNEKILNLFFEINSFKIAEKNIIYWEN
FKPYKIRGDVSSLNIVDPKCKKIIVEEGCRVNKNLVLKLNELKIKKIKVPIEYLIGKILV
NKQVNKITKEDIYNSNTKLNLKKINKLLKNKVKKINTIYTNDLDTGSLIYETIKGDTTTT
QMEAILEIYSIMRPGEPPNKDSAELIFKSFFLSLEKYNLSAVGRMKVNSRLNKKNKKGSG
IVNAEDIIDVTKELIQIRNGFGEIDDIDHLGNRRIRSVGELAANNFKSGLLRVEQSIRER
LLLTESDEKLRPKDLINVKQITAAMKEFFISSQLSQFMDQTNPLAEITHKRRISALGPGG
LTRDRAGFEVRDVHSTHYGRLCPIETPEGPNIGLINSLATYSKINKYGFLETPYRRVENR
KVSKEVIKLSAIEEAEYVIAQASVRVNKNEELKDELVQVRSKGETTFMQTDKVNLMDVSP
CQIVSIAAALIPFLEHDDANRALMGSNMQRQAVPTLIAEKPLIGTGMERIVAKDSGVCIK
AKRSGIVEVVDSKTIVIRVNENALDGNEYCVDLYNLNKYMRSNQNTCQNQRTIVNEGDII
EVGDILADGTAVDTGELALGQNMRIAFMPWNGYNYEDSIIISERVVREDRFTTIHIQEVT
CISRDTKLGHEEITSDIPNVSEASLSKLDESGIVYIGAQIKAGDILVGKVTPKGEKKLTP
EEKLLRAIFGDKASEVKDTSLRATTGTIGTVINVQIFTRDGIKKDLRAREIEKRKIEEIS
KDLKKAYRITKEITIKRLKTVITGKEALKGHKIQKGEIVNDEYFQKIKNTKQWYKLRMKD
DQLNKKIKKTKEQIEKLHEEKERYFIEKKRKLIQGDDLAPGILKVVKVFLAIKRKIQPGD
KMAGRHGNKGVISAIKPIEDMPFDKKGEPVDIVLNPLGVPSRMNVGQILETHLGMAAHML
GIKINILLKEKTKVKEIRILIKKIFNRIGFCKQENLERLQDEDIIRLANKFSKGVHLATP
VFDGATEKEIKALLKLSGVHKSGQVPLYDGCTGERFDRKVTVGYMYMFKLNHLVDDKMHA
RSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDIGGRTKMY
KSIVDGDYTMQASMPESFNVLVKEIRSLGIDVEKE
NT seq
4068 nt
NT seq
+upstream
nt +downstream
nt
atgggttcttcatacacgaaaaaaaccaatattcgtaaaatttttggtaaaatacctcag
ataatggaggtaccttatttattatctattcaaatagaatcatataaaaattttttaaaa
aaaaaaacaaatataggaataaacgcagcattaaattcaatatttcctataaaaagttta
tcaggaaaagcattattagaatacgtggattataacttaatgaagccagtttttgatgtg
aaagaatgtaaaataagaggtatgacatattattctaatttgcgtgttaaaatgaggtta
gttatttttgatgaaatagaaaaacaaagaattataaaatatgtaaaagagcaagaagta
tatatgggtgatatacctttaataacaaaaactggtacatttgtaattaatggaacagaa
cgggtagtagtatcacaattacatagaagtcctggtttgttttttgataatgatcataat
aaaaattattcaataggcaaattaattgctactgcaagaataataccttatcgtggttct
tggtttgattttgagtttgatcaacgtgataatatttttgtacgaatagatagaagaaaa
agaatccctgtaacagttctattacgcgctttaggtttaaataatgaaaaaatattaaat
ttgttttttgaaataaatagctttaaaattgcagagaaaaatattatttattgggaaaat
tttaagccatataaaataagaggggacgtatcaagtttaaatatagtagatcctaaatgt
aagaaaattatagtcgaagaaggttgtagagttaataaaaatttggttttaaaattaaac
gaattaaaaataaaaaaaataaaagtaccaatagaatatttaataggaaaaatattagtt
aataaacaagttaataaaataactaaagaagacatatataacagtaatacaaaactaaat
ttaaaaaaaataaacaaattattaaaaaataaagtaaaaaaaataaatacaatatataca
aatgatttggatacaggttcgttaatttatgaaactataaagggtgatacaacaacaact
caaatggaggcaatattggagatatatagtattatgcggccaggagaaccaccaaataaa
gattcagcagaattaatatttaaaagtttttttttgtcgcttgagaaatataatctgtca
gcagttggtagaatgaaagttaatagtagactaaataaaaaaaataagaaaggtagtgga
atagtaaatgctgaagatataatagatgtgacaaaagaattaatacaaattagaaatggt
tttggcgaaatagatgatatagatcatttaggaaatagacgtattcgtagtgttggagaa
ttggcagcaaataattttaaatcaggattattgcgagttgaacaatctataagagaaagg
ttgttgttaacagaatctgatgaaaaactaaggcctaaagatctaataaatgttaaacaa
atcacagctgcaatgaaagagttctttatttcaagtcaattatcccagtttatggatcaa
acaaatcctttagctgaaattactcataaaagaaggatctcagcgttaggaccagggggg
ttaacacgagatagagcaggatttgaagtgcgggatgtacattcaactcattatggaagg
ttatgccctatagaaactccagagggaccaaatatagggttaataaattctttggcgaca
tatagtaaaataaataaatatggatttttagaaacaccttatagaagagtagaaaacagg
aaagtttcgaaggaagttataaaattatcagcaatagaagaagcagaatatgtgatagcg
caagcttcggtaagagtaaataaaaacgaagaattaaaagatgaattagtgcaagtaaga
agtaaaggggaaactacttttatgcaaacagataaagtaaatttaatggatgtttcacct
tgtcaaatagtttcaatagcggctgctttaattccatttttagaacatgatgatgctaat
agagcattaatgggctcaaatatgcaaagacaagcagttccaacattaatagcagaaaag
ccattaataggtactgggatggaaagaatagtagcaaaggattcaggcgtttgtatcaag
gcgaaacgtagtggtattgtagaagttgtagattcaaaaacaattgttattcgtgtgaat
gaaaatgctttagatggaaatgaatattgtgtagatttatataatttaaataaatatatg
cgttcaaatcaaaatacatgtcaaaatcaaagaacaatagtaaacgaaggtgacattata
gaagtaggagatattttagcagatggtacagccgtagataccggagagttggctttagga
caaaatatgagaatagcatttatgccttggaatggttataattatgaagattcgattatt
atttcagaaagagtagttagagaggatagatttactacaattcacattcaagaagtaaca
tgtatatcacgcgatactaagttaggtcatgaagaaataacatcagatataccaaatgta
agtgaagcatcgttaagtaaattagatgaatctggcattgtatatattggagcgcaaata
aaagcaggagatattttagtaggtaaagttactccaaaaggggaaaaaaaattaacacca
gaagaaaaattgttacgtgctatatttggagacaaagcatcagaggttaaagatacatct
ttacgggcaactacaggtactataggaacagttataaatgtacaaatatttacaagagat
ggcataaaaaaagatttaagagcaagggaaatagaaaaaaggaagatagaagaaataagt
aaggatttaaaaaaagcatatcgtataacaaaagaaataacaataaaaagattaaaaaca
gtaataacaggtaaagaagcattaaaagggcacaaaatacagaaaggtgagattgtaaat
gatgagtattttcaaaaaataaaaaatacaaaacaatggtataaattaagaatgaaagat
gatcagttaaataaaaaaataaaaaaaacaaaagagcaaatagaaaaactacatgaagaa
aaggaaaggtattttatagaaaaaaaaagaaaattaattcaaggtgatgatttagctcca
gggattttaaaagttgtcaaagtttttttagcgataaaaagaaaaatacaaccaggagac
aaaatggcaggacgacatggaaataaaggagtaatatctgctattaaacctatagaagat
atgccttttgataaaaaaggtgaaccagtagatatagtacttaatccattaggagttccg
tcacgtatgaacgttggacaaattttagaaacacaccttggaatggcggctcatatgtta
ggtataaaaataaatattttgttaaaagaaaaaacaaaggtaaaagaaataagaatattg
ataaaaaaaatttttaatagaataggattttgtaaacaagaaaacttagaacgtttacaa
gatgaggacataattagattagcgaataaattttcaaaaggagttcatttagcaacacca
gtttttgatggagcaacagaaaaagaaataaaagcattgcttaaattatcaggagttcat
aaatctggacaagtacctttatatgatggctgtactggagaaaggtttgatagaaaagta
acagtaggttatatgtacatgtttaaattaaatcacttggttgatgataaaatgcatgca
aggtcaacaggctcatattcgttagttactcaacaaccattaggtggaaaagctcaattt
ggaggacaacgttttggtgaaatggaagtatgggcattagaagcttatggtgctgcatat
actttacaagaaatgttaacagtaaaatcagatgatattggagggcgcacaaaaatgtat
aaaagtattgttgatggagattatacaatgcaggctagtatgccggaatcatttaatgtg
ttagtaaaagaaataagatcattaggtatagatgtagaaaaagaataa
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