Candidatus Portiera aleyrodidarum BT-QVLC: C548_121
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Entry
C548_121 CDS
T02307
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
plo
Candidatus Portiera aleyrodidarum BT-QVLC
Brite
KEGG Orthology (KO) [BR:
plo00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
C548_121
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
plo03021
]
C548_121
Transcription machinery [BR:
plo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
C548_121
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r2
Sigma70_r3
Sigma70_r4
Sigma70_r1_2
Sigma70_r1_1
HTH_26
Motif
Other DBs
NCBI-ProteinID:
AFT80487
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Position
141308..143044
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AA seq
578 aa
AA seq
DB search
MFEILELNIKELINKGKEQGFLINSEICELFDNEKVDEIICIVKDKGINIIDKISEVENI
YKNVEDKNICKKENDIRHFDPVRIYMREMGKIDLLDRKGEIEIAKKIEEGTKEIMAALVY
LPGAVDYVLEIYDLIIKDTEVNFYDLFTGFMYFKKVKKEEKLKAKNNVLISETYNEGPDH
ILTKNLFEKIRKQNKQVKINVLTYGYKSKEAKMELKLLSKYFSKIKFLPKHFEGLLSKVR
LSIKNIRFHENLILKYMVKMVKLSRKEIINSFIGNEANLKWLDKFILNTEKTISRKNYRS
NILKSQKKILLEQQQINLSVVELKEINRKLLIGEYKAHKAKQELIEANLRLVISIAKKYT
NRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVH
MIETINRLKRLSRKMLQERGIEPTPEELSNRLEISENKIRKILKIAKEPVSIETPIGEDE
DYYLSDVIEDNITASPIDAATDEGLVEATRNVLSELTAREAKVLRMRFGIDMSTDHTLEE
VGKQFDVTRERIRQIEAKALRKLRHPSRSEALRSFLEE
NT seq
1737 nt
NT seq
+upstream
nt +downstream
nt
atgtttgaaatattagagttaaatataaaagagttaattaataaaggtaaagaacaagga
tttttgataaattcagaaatttgtgagttgtttgataatgaaaaagtagatgagatcata
tgtatcgttaaagacaaaggaataaatatcattgacaaaatatcagaagtagaaaatatt
tataagaatgttgaagacaaaaatatttgtaaaaaagaaaatgatattcgtcattttgat
cccgtgcgaatatatatgagagaaatgggaaaaatagatttattagatagaaaaggtgaa
atcgaaatagcaaaaaaaatagaagaaggtacaaaagaaattatggcagcgctagtatat
ttaccgggagcagttgattatgtattagaaatttatgatttaataataaaagatacagaa
gtaaatttttatgatttgtttactggttttatgtattttaaaaaagttaaaaaagaagag
aaattaaaagcaaaaaataatgtattaattagtgaaacgtataatgaaggaccagatcat
atattgacaaaaaatttgtttgaaaaaattcgtaaacaaaataaacaagtaaaaataaac
gtgttaacatatggttataagtcaaaagaagcaaaaatggaattaaaacttttatcaaag
tacttttcaaaaataaaattcttgccaaaacattttgaagggttgttaagtaaggtacgt
ttaagtataaaaaatataagatttcatgaaaatttgatattaaaatacatggtaaagatg
gtaaagttatcaagaaaggaaattataaatagttttataggtaatgaagcaaatttaaag
tggttagataaatttatattaaatacagagaaaacaattagtagaaaaaactatagaagt
aatattctaaaatcacaaaaaaaaatattattagaacaacaacaaataaatttatcggtt
gttgaattaaaagaaataaatcgaaagttgttaataggagaatataaggctcataaagca
aaacaagaattgattgaagctaatttgagattagtaatttcaattgcaaaaaaatataca
aatcgtggattacaatttttagatttaattcaagaaggtaatataggtttaatgaaagca
gttgataaatttgaatatcgcagaggatataaattttctacatatgctacatggtggata
cggcaagcaataacgagatcaatagctgatcaggcaagaacaataagaataccagtacat
atgatagaaacaataaatagattaaaaagattatcaagaaaaatgttgcaagaaagaggc
atagaacctactccggaagaattaagcaatcgacttgaaatttcagaaaataaaataaga
aaaattttgaaaattgcaaaagaacctgtttctattgaaacaccaataggggaagatgaa
gattattatttaagtgatgtgatagaagataatattacagcatcacctatagacgcagca
acagatgaaggattagtggaagcaacaagaaatgtattaagtgagttaacagctagggaa
gcaaaagttttaagaatgagatttggaatagatatgtctacagatcatacattagaagag
gtaggtaagcaatttgatgtaacgcgtgaaagaattcgtcaaatagaagcaaaagcattg
cggaaattaaggcatccatcacggtcagaagctttaagatcatttttggaagagtag
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