Candidatus Portiera aleyrodidarum BT-QVLC: C548_164
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Entry
C548_164 CDS
T02307
Name
(GenBank) Transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
plo
Candidatus Portiera aleyrodidarum BT-QVLC
Pathway
plo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
plo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C548_164
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
plo03021
]
C548_164
03019 Messenger RNA biogenesis [BR:
plo03019
]
C548_164
Transcription machinery [BR:
plo03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
C548_164
Messenger RNA biogenesis [BR:
plo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
C548_164
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_22
OB_RNB
AAA
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
AFT80530
LinkDB
All DBs
Position
complement(199962..201152)
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AA seq
396 aa
AA seq
DB search
MNVENILRSKKQDIIFAILKKQAKGGEDIYGEGVLDVLQEGFGFLRSSDSSYQPGPSDIY
VSPSQIRRFNLRKGDSIYGKIRPPKDGERYFALLKVNKINFDRIETVKQKILFENLTPLF
PTYRLIMDGSTDDLTARILDLVAPIGKGQRGLIVSPPKAGKTMMMQNIANSIVRNSPECY
LIFLLIDERPEEVTEMSRTVIGEVIASTFDEPPTRHVQVAEMVIEKAKRLVEHKKDVVIM
LDSITRLARAYNTVVPSSGKILTGGVDSNALEKPKRFFGVARNIEEGGSVTILASALIDT
GSKMDDIIFEEFKGTGNMEAHLDRKLAEKRVFPAINIRRSGTRREDLLCSEEEIQRMWIL
RKILHSMEDVEATELLIDRLKTTKNNIEFFESMKRR
NT seq
1191 nt
NT seq
+upstream
nt +downstream
nt
atgaatgtcgaaaatatattacgttctaaaaaacaagatattatttttgcgattctaaaa
aaacaagctaaaggcggagaagatatatatggagaaggagttttagatgttttacaagaa
gggtttggttttttaagaagctctgatagttcgtaccaaccaggtccttctgatatatat
gtgtctccatcacaaattagacggtttaatttacgtaaaggtgatagtatttatgggaaa
atacgtccaccaaaggatggtgaaagatattttgctttattaaaagtaaataaaataaat
tttgatagaatagaaactgttaaacaaaaaattttatttgaaaatttaacgccattattt
ccaacttatagattaataatggatggttcgactgatgatttaacggcaaggattttagat
ttggtagcaccgattgggaaagggcagagaggtttaattgtttcacctccaaaagctgga
aaaactatgatgatgcaaaatatagctaattcaatagtacgtaacagtccagaatgttat
ttaatttttttattaattgatgaacgtcctgaagaagtaacagaaatgtctagaacagta
attggtgaagttattgcttcgacatttgatgaaccacctactagacatgtacaagtagct
gaaatggttatagaaaaagcaaaaagattggttgaacataaaaaagatgtagtcataatg
ttagattctattactagattagcaagagcttataacacagtagttccttcatctggaaaa
attttaacagggggagtagattcaaatgctcttgaaaaaccaaaaagattttttggtgta
gcacgtaatatagaagaaggtggaagtgtaactattttagcatcagcgttaatagatact
ggatcaaaaatggatgatataatttttgaagaatttaaaggtacaggtaatatggaagca
catttggatcgtaaactagctgaaaaaagagtgtttcctgcaataaatattagacgctca
ggtacacgtagagaagatttattatgtagtgaagaagaaatacaacgtatgtggatttta
cgcaaaatattacatagtatggaggacgtagaggcaacagagttattaatagatagattg
aaaactactaaaaataatatagaattttttgaatcaatgaaaagaagataa
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