Polystyrenella longa: Pla110_08570
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Entry
Pla110_08570 CDS
T06945
Symbol
hrdA
Name
(GenBank) RNA polymerase principal sigma factor HrdA
KO
K03086
RNA polymerase primary sigma factor
Organism
plon
Polystyrenella longa
Pathway
plon02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
plon00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Pla110_08570 (hrdA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
plon03021
]
Pla110_08570 (hrdA)
Transcription machinery [BR:
plon03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Pla110_08570 (hrdA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r2
HTH_23
Mor
HTH_29
HTH_38
HTH_17
MerR
MerR_1
HTH_Tnp_ISL3
CENP-B_N
AbiEi_4
KORA
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
QDU79152
UniProt:
A0A518CIU2
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Position
1075276..1076940
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AA seq
554 aa
AA seq
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MSRYHHPAIKLLTDQQVRYAPVEARLKQVERAEKFLAELDREVVYLYPQVSEHVLGYKGE
HYPNLELSGEELAHDLRLFIEDLSGSANINAESVGEPVLTVKDVSHRYNVSTKTVDRWRD
QGLVSRRFKFGNRKRIGFLKSSVERFVSQFGDKVERGMNFSQLTDEEREEIIQRARRLAR
VGGCPTEISKRLAERLGRSQEAIRYTLKNYDIENPENAIFPSAHSALTEDEKVEIYRRFK
QGDSVADLSRRYCRKRNSIYRILNEVRAERLLEQKIDYMDSPEFEERKADEIILGPPPTT
DKKKSAVKVPPGLPPYLASLYSVPLLTREEEAHFFRKMNYLKFKANKLREELEVRHLDTG
KMDQIEECLEQSQTVKNFLTRSNLRLVVSIAKKHVKPEVNFFEMISDGNMSLIRAIEKFD
YTKGFKFSTYASWAIMKNYARSIPAEHTHRDRYRTGKEEMFSQSHDDGSNPFQQEMDHKK
QRLAVLDILERLDEREKGILVSRYGLEKGSEPQTLEQVGREFGVTKERIRQLESRALQKL
RKIATAEPIDVPGV
NT seq
1665 nt
NT seq
+upstream
nt +downstream
nt
atgtcccgctatcatcaccccgcgatcaaacttttgacggatcagcaggtacggtatgcg
cccgtcgaagcccgattaaaacaggtggagcgagcggagaaattcctggctgagcttgat
cgagaagtcgtctacttgtacccccaggtcagcgaacatgttctgggatacaaaggagag
cattacccgaatctcgaactgagcggtgaagaacttgcgcacgatctgcgtctgtttatt
gaagatctttccggttcggccaacattaatgccgagagcgtcggcgagcctgtgctaaca
gtgaaagacgtcagccaccgttacaacgtatccaccaaaacagtagaccgctggagagat
caaggtctcgtcagtcgtcggttcaaattcggcaatcgaaaacggatcggtttcttgaaa
tcgtctgtggaacgcttcgtttctcagttcggtgataaggtcgaacggggaatgaatttc
agtcagcttacggatgaggaacgcgaagaaattatccagcgtgcccgccgtctggcccgc
gtcggaggttgtcctacggagatatccaaacgcttggccgaacgtcttggacggtctcag
gaagcgattcgttacacactgaaaaactacgatatcgaaaatcccgaaaacgccattttc
ccttcagcacacagcgcgctgacagaagatgaaaaggtcgagatttaccgtcgcttcaag
cagggtgattctgttgcagatctgagtcgtcgttactgccgcaaacgtaattctatctat
cgaattctcaatgaagttcgggcagaaagattactcgagcagaagatcgactacatggac
agtcccgaattcgaagaaagaaaagcagacgaaatcattctggggccacctcctaccacg
gacaaaaagaaatctgcggtgaaagttccaccgggacttcccccgtatttggcgagtctg
tactccgtaccgctgttaacgcgggaagaggaagcacacttcttccgaaaaatgaactac
ctcaaattcaaagccaacaagctgcgtgaggaattggaagttcgccaccttgatacgggc
aaaatggatcagatcgaagaatgtctggaacaatcccaaaccgtcaagaatttcctgact
cggagtaatttgcgcttggtcgtttcgattgccaagaagcacgttaaaccggaggtgaat
ttctttgaaatgatcagcgatggcaatatgtccttgattcgcgcaatcgagaagtttgat
tacaccaaaggtttcaaattctcaacatacgcaagttgggccatcatgaaaaactacgct
cgttcgattcctgccgagcacacgcatcgggatcgatatcgtacgggtaaagaggagatg
ttcagtcaatctcacgacgatggatcgaaccccttccaacaggaaatggaccacaagaaa
caacgtcttgcagtactggacattctggagcgattggatgaacgagaaaaaggtatcctc
gtcagtcgatacggtctggaaaaaggatcggaaccgcagacactcgaacaggtgggccgc
gagtttggcgtaaccaaagagcgtattcgccaacttgagtcccgtgccctgcagaaacta
cgaaagatcgctacagcagaacctatcgatgttcccggtgtttag
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