Polystyrenella longa: Pla110_16780
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Entry
Pla110_16780 CDS
T06945
Symbol
rnr
Name
(GenBank) Ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
plon
Polystyrenella longa
Pathway
plon03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
plon00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Pla110_16780 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
plon03019
]
Pla110_16780 (rnr)
03016 Transfer RNA biogenesis [BR:
plon03016
]
Pla110_16780 (rnr)
Enzymes [BR:
plon01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Pla110_16780 (rnr)
Messenger RNA biogenesis [BR:
plon03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Pla110_16780 (rnr)
Transfer RNA biogenesis [BR:
plon03016
]
Prokaryotic type
tRNA degradation factors
Pla110_16780 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
OB_RNB
RNase_II_C_S1
BORCS7
Motif
Other DBs
NCBI-ProteinID:
QDU79956
UniProt:
A0A518CL60
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All DBs
Position
complement(2161257..2163617)
Genome browser
AA seq
786 aa
AA seq
DB search
MSGKIIFQIKQYLAQSDYKPMTEEMLAKKLDLKKKERSAFGQALDRLIERGEIKVGKKNR
LRLKSTVSQEVVGKLKKIASGAGFVMPNELPPDLSPSERRTHDIFVAAEDLIDACSGDEV
AAVLLKRTRRGGQRCGRIQRIISRATNTFVGTYKEDNHNGWVQVDGNIFHEWIYVGDPGA
KGVEPEDTVVIEMLRFPSHQAEGEAVITKVLGPRGEPGVDLQLVMYEYGLPQEFPDAVLE
AASQEAELFDEDVIGDRLDLREELIVTIDPKEARDFDDAISLKKNEAGHWVLGVHIADVA
HFVKPGSTLDREATQRGNSVYLPQMVIPMLPEVISNGLASLQADRNRYVKSVFIEFTPDG
IPVHTDFANAVINVKRRFAYEDVMPILEDPEKHANDVSAEIRTLLAKMYELSRILRQRRM
AHSSLQLEMPEIHLNFNKEGEVAGAEEAHHDESHEVIEEFMLAANVAVAETLSAKGIPFP
RRVHPTPSAVKMQNLKVFVEALGFSLPQPEDRNAIRDLLAEVRGTPLESPLSYAVLRSMK
QAIYTTTEEGHYALNFENYCHFTSPIRRYPDLIVHRLVDDLIQGKKRKGRQSPEDMEEAC
KRCSETERRAEKAERALVKLKLLQYVSTQIGMQFDAIITGVQHFGVFCQGIDIPIEGLLP
LEGLADHELFDYDEKTLTLTGRRSAQVFRLGDAIRVQVGKVDLEKRELDLELVSHEPSVQ
LKAPAKGGNPRQKEESRNGNRGPKNPNARGRKGPKGASSGSKKKGGTRSKTPKGRGPSKT
RRKRKK
NT seq
2361 nt
NT seq
+upstream
nt +downstream
nt
atgtctggaaaaataatatttcaaatcaaacaatatctggctcagtccgattacaaaccg
atgaccgaggagatgctggcgaaaaagctggatcttaaaaagaaagaacggtcggcattc
ggccaggccctcgaccggttaattgagcgcggggaaatcaaggtcggcaagaagaaccgc
ttgcggcttaaatcaacagtctctcaggaagtcgtcggtaagctgaaaaagattgcttcc
ggtgctggcttcgtgatgccgaatgagcttcctcctgatctcagcccatcagagcgacgt
acgcacgatatctttgttgccgcagaagacttgatcgacgcctgctccggtgacgaagtc
gctgctgtccttctcaaacgaacacgccgcggcggacaacgatgcggtcgcatccaacgg
atcatctcccgtgcgacgaatacattcgttggtacgtataaagaagataaccacaacggt
tgggtgcaggtcgatggcaacatctttcacgaatggatttacgtcggcgacccgggtgcc
aagggtgttgagccagaagacaccgttgttatcgaaatgcttcgatttccctctcatcaa
gcggaaggggaagcggtcatcaccaaggtattgggaccacgcggggaacctggcgtcgat
ctgcaactcgtaatgtatgaatacggcctaccacaggaatttccggatgctgtcctggag
gcggccagtcaggaagcggaactattcgacgaagacgttatcggcgatcgcctcgacctg
cgcgaagaattgatcgtcaccatcgacccaaaagaagcccgtgactttgacgacgcgatt
tcgctcaagaagaatgaagcaggccactgggtcctgggcgttcacatcgctgatgtcgcc
cactttgtaaaaccgggatcgacactcgaccgggaagcgactcagcgagggaactcggtc
taccttccgcaaatggtcatccccatgcttccggaggtgatctccaatggactcgcttca
ttgcaggcggatcgaaatcgttatgtgaagtcggtctttatcgagttcactccggacgga
atcccagtacacacggatttcgccaacgccgtgatcaatgtcaaacggagattcgcttac
gaagatgtgatgccgattctggaagatccggaaaagcatgcgaatgatgtttccgccgaa
attcgaactcttctggcgaagatgtacgaactctcgcgtatcctgcgtcagcgacgcatg
gctcatagttcactgcaactggaaatgcccgagattcatctcaactttaataaagaaggc
gaagtcgccggtgcggaagaggcccatcatgatgagtctcacgaggtcattgaagaattc
atgctggcagccaatgtggctgtcgctgaaacactgtctgccaaaggaatcccgtttccc
cgacgcgtgcaccccactccatcagcggtcaagatgcaaaacctgaaagtcttcgtcgaa
gcactcgggttttcactaccacaacccgaggaccgaaacgccatccgcgacttactcgcg
gaggttcggggcactcctctggaaagtcccctcagctatgctgtactccggagcatgaag
caggcgatatacaccaccaccgaggaagggcactacgcactcaattttgagaactactgc
cactttaccagtccaatccgtcgttaccccgacctgattgtgcaccgcctggtcgacgat
ctgattcaaggcaaaaaacgcaaagggcgccaatcgcccgaggacatggaagaagcgtgt
aaacggtgcagcgaaacagaacgacgggctgaaaaagcggaacgggccctcgttaaactg
aaactgctgcaatacgtctccactcaaatcggaatgcaattcgacgctatcatcacgggc
gtgcaacatttcggtgtattttgccagggaattgatatcccgattgaaggccttcttcct
ctggaaggactggccgatcatgaacttttcgactacgacgaaaaaacactgaccttaacc
ggtcgccgcagcgctcaagtctttcgtctgggagacgccattcgagttcaggtcggcaaa
gtcgatctggagaaacgcgaactcgacctcgagctagtttcgcatgaaccctcagtccag
ctcaaagcccctgccaaaggaggcaatcctcgtcagaaggaagagagcaggaatggaaat
agaggcccgaaaaatccgaatgcgcgaggtcggaaggggcctaaaggggcttcatccggt
agcaagaaaaaaggaggcactcgctctaaaacacccaaagggcgtggaccgtccaaaacc
agacgtaaacgcaaaaaatag
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