Polystyrenella longa: Pla110_23330
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Entry
Pla110_23330 CDS
T06945
Symbol
cshA
Name
(GenBank) DEAD-box ATP-dependent RNA helicase CshA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
plon
Polystyrenella longa
Pathway
plon03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
plon00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Pla110_23330 (cshA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
plon03019
]
Pla110_23330 (cshA)
03009 Ribosome biogenesis [BR:
plon03009
]
Pla110_23330 (cshA)
Enzymes [BR:
plon01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Pla110_23330 (cshA)
Messenger RNA biogenesis [BR:
plon03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Pla110_23330 (cshA)
Ribosome biogenesis [BR:
plon03009
]
Prokaryotic type
rRNA helicases
Pla110_23330 (cshA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
P-loop_SecA
CMS1
Cas3-like_C_2
DUF1699
Shikimate_DH
Motif
Other DBs
NCBI-ProteinID:
QDU80602
UniProt:
A0A518CMZ8
LinkDB
All DBs
Position
complement(3030448..3031668)
Genome browser
AA seq
406 aa
AA seq
DB search
MNTKENKSRSNKKRPSKKTQKTPDTEFASLGLNPKVLARLDKLGYKKPSPIQEQFIPIAL
TGRDVTGQAQTGTGKTAAFGLPILEQMDPRLPGLQAIILTPTRELSEQVSNELERLGPKS
LKMAVLVGGRPIRKQIRDLENGAQMVVGTPGRVIDLLFRKDLVLDQVKFVVLDEADRMLD
IGFRPDIEKIMKRCPEQRQTLLLSATMSSEVERLAKRYMIDPDRVDLSEKDVANKSIQQF
YISVDADRKISLMAKFLLQERPQQVLVFTRTKRGAERLYKTFAKKLKNIAVIHGDLAQPK
RDSVIKEFRGGKTRMLIATDVVGRGIDISGISHIINYDVPEFCDDYVHRIGRAGRLSSVG
KGQAITFVTREQGSQLTEIEKRINMLLDEYEIKDFQPVRPRPPKNY
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
gtgaatacaaaagagaataaaagccgatccaataaaaaacgtccctcgaaaaaaactcaa
aaaacgccggataccgaattcgcttcgctcggtttaaatccgaaagtcctggctcgcctg
gataaactcggttataagaaaccgagtcctattcaagagcaattcattccgatcgcactc
acagggcgcgatgtcaccggccaggctcaaacgggcaccggtaagacggccgcctttggt
ctgcccatactggagcagatggacccccgccttcccgggctgcaagcaatcattcttaca
cctacacgggaactgagcgaacaggtctcaaatgaactggaacgtcttggtcccaaaagc
ctgaaaatggctgtgctggtgggggggcgtcctatccgtaagcaaattcgcgatctggaa
aacggagcgcaaatggttgtcggtacgccgggtcgagtaattgacctgttgtttcgaaaa
gatctagttctcgatcaggtgaagttcgtcgttctggacgaagctgaccgtatgctcgat
atcggtttccgtccggatatcgaaaagatcatgaaacggtgccctgagcaacgccagaca
ctcctgctttcagctacgatgtcttccgaagtggaacggcttgccaagcgatacatgatc
gatccggatcgcgtcgatctttcagagaaagacgtcgccaataaatcaattcagcagttt
tacatcagcgtcgatgcagaccgcaaaatctcgttaatggctaagtttcttctccaggaa
cgtccccaacaggttctggtgttcacccgtaccaaacggggagcggaacgattatataaa
acgttcgcgaagaagctgaaaaacattgccgtcatccatggtgacctggcgcaaccgaaa
cgcgacagcgtgatcaaagaattccggggtggcaaaacgcgaatgttgattgcgacggat
gttgtgggtcgcggaattgatatcagcggtatctctcacatcattaattatgatgtgccc
gaattctgtgatgattacgtccaccgcattggaagagcagggcgactctcctcagtgggc
aaaggccaggcaattacctttgttactcgtgaacaaggatcgcaactgacagagatcgaa
aaacgcatcaacatgcttctcgatgaatacgagatcaaagattttcagccggtgcgaccg
cgaccgccgaagaattattaa
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integrated database retrieval system
