Polystyrenella longa: Pla110_34580
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Entry
Pla110_34580 CDS
T06945
Symbol
mfd_2
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
plon
Polystyrenella longa
Pathway
plon03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
plon00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Pla110_34580 (mfd_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
plon03400
]
Pla110_34580 (mfd_2)
Enzymes [BR:
plon01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Pla110_34580 (mfd_2)
DNA repair and recombination proteins [BR:
plon03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Pla110_34580 (mfd_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
AAA_22
Cas3-like_C_2
MFD_D3
DNA_photolyase
Motif
Other DBs
NCBI-ProteinID:
QDU81713
UniProt:
A0A518CR75
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Position
4518925..4522206
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AA seq
1093 aa
AA seq
DB search
MSQMTTRQELSQLVPLIQDTPNFTDVVAALHQGNSGAIDGAWGSSSALSAAALSKECQGT
LLVVLPRLNEVDDFALDLAGFVNATPFIFPAWESSPAEHDVTDSIFGGRLRLLRQLEDQS
PSLVVTSLTALIQPVPSRETRQAGTCTLSVGDDLDLDPFLNWLVEQGFLRVAAITAPGEF
SLHGGILDIYPADTVEPLRVELFGDEIESIRAFDPETQRKTEDLPSASFTLIKPLQTEQS
ESAESQKDKSSVRPASILEGSLFDSLPEKSWVVFVELEDAISEARHYLTRLDDPRGLFSV
EATLERATSSPSVTIARISADSYETSCHLQVESIERFGGPRSEVLLELASITDKTERVLI
ACHNEGEQERLTELLEESELTFGQGITLCLGRIQHGFRLVRNRLIVLSDHELFGRSDLHR
GKQKRRWESRAIDSFLDLKEGDLVVHLANGIGRFRGIHQLDKEGQVEEHLQLEFRDNVKV
YVPVSLIHLVQKYVGSAKVSPKLSKLGTTSWNRKKEQVTQAVTDLASDMLRMQALRTNQT
GFEFPPDSHYQKEFEALFPYEETPDQLTSIVEVKHDMRSPQPMDRLICGDVGYGKTEIAM
RAAFKAIDAGKQVAMLVPTTVLAEQHFRSFSERMAEFPVTLEVISRFRTKRQQRDILERL
ARGQVDMIIGTHRLVQKDVRIKNLGLIIVDEEQRFGVEHKEMLKQLRLAVDVLTLSATPI
PRTLHMSLLGIRDISNLTTPPPDRQAIETRISRFDPELIRSAIVRELNRGGQVYFVHNRV
KDIHTIADRLLSIVPEARIGIGHGQMKGDELEEVMLDFVNHKIDILLSTTIIESGVDIPN
ANTMFIHQAGNYGLADMHQLRGRVGRYKHRAYCYLLLEEGKILTTTSAKRLKAIEEYSEL
GAGFKIAMRDLEIRGAGNIIGTEQSGHIASVGYELYCQLLENAVRHIRNEPVREHRHVNI
DLPVSAYLENSYIPPGRPKIEVYRKLSMVQTLEELEQLQEEIRDRFGPLTESTHRLFELK
HLEVLARQWDIGSIYLEQRFAVFKYKHAIKIEQLKERHGRTFRVADRNTAYWVLSDRNLT
EEALLQELKSVLQ
NT seq
3282 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcagatgacgaccaggcaagagctatcgcagctcgtgcctctcattcaagataca
cccaatttcacagacgttgtcgccgccctgcatcaaggtaacagtggggcaatagacggc
gcctggggttcttcgtccgcgctgtccgcggcagctctgagcaaagagtgccaaggcaca
cttctagtcgttttgccccgcctgaatgaggttgatgacttcgctctcgacctcgctggc
ttcgtcaatgccactccctttatctttcccgcctgggagtcctcccccgcagaacacgac
gtcactgactcgatatttggtggtcgattgcgacttctgcgacaactcgaagaccaatct
ccatcgctcgttgtcaccagcttaacggccttaattcaacccgttcccagccgagaaacg
cgtcaagccgggacctgcaccctcagtgttggagacgatctggatctcgatccatttctt
aattggttggtagaacagggttttctacgagttgcagcaattacggctccgggcgagttc
tccctgcatgggggaattctcgatatttatcccgccgatactgtcgaacctctgcgggtc
gaactttttggcgacgaaattgaaagcattcgcgccttcgatccggaaacgcagcgcaaa
acggaagacttgccatccgcctcattcacgttgattaagccacttcaaactgaacaatcg
gaaagtgccgagagccagaaagacaaatcgtcggtccgacctgcttcgatcctggaaggg
agtctatttgattcccttccagagaagtcttgggtcgtcttcgtagagttggaagacgcg
attagtgaagcacgacactacctcacccgcctggatgacccccgcggcctgttcagtgtc
gaagcgacattggaacgggcaacttcctctccctccgtaacgattgcccgtatttcggct
gacagttatgaaacatcctgccacctgcaggtcgaatcgatcgaacgattcggcggtccg
cgcagcgaagttctcctggaacttgcatcgatcaccgacaaaaccgaacgcgttttgatt
gcctgtcacaatgaaggtgaacaggagaggttgactgaattactggaagagtccgaactg
acattcggtcaaggaattactctttgtctcggtcgcatccagcatggcttccggctcgtt
cgaaatcggttaattgtcctcagtgatcatgagttgtttggaaggtctgacctccaccga
ggcaagcagaaacgtcgctgggaatcacgagcgatcgacagctttcttgatctcaaagaa
ggcgatcttgtcgtccatctggctaacggaatcggacgctttcgcgggatccaccagctc
gataaagagggtcaagtcgaagaacatttgcagttagagtttcgggacaacgtaaaagtt
tacgtacccgtatcgctgattcacctcgttcagaaatatgtcggtagtgcaaaggtctcc
cctaaactttccaaactgggaacgaccagttggaaccgtaaaaaagaacaagtcacccaa
gccgtcacagacctggccagcgatatgcttcgtatgcaggcgttgcgcaccaaccaaacc
ggttttgaatttcctccggacagtcactatcagaaagagtttgaagccctttttccctat
gaggaaactcccgaccaactgacctccatcgtcgaggtcaagcatgatatgcgatcgccg
caacccatggaccgtttgatatgcggtgacgtgggatatggcaaaactgaaattgcgatg
cgagctgcatttaaagcgatcgatgctggaaaacaggtagcgatgctcgtacccacgact
gtccttgcggagcagcattttcgttccttctcggaacgtatggccgagtttcccgtcaca
ctggaagtcatttcccgatttcggaccaaacgacaacagcgcgacattctggagaggctt
gcacgtggccaggtcgatatgatcatcggcacgcatcgtctggtgcagaaggatgttcgt
atcaaaaatcttggtttgattatcgtcgatgaagaacagcgattcggtgtcgaacataaa
gagatgctgaagcaacttcggctggcggtggatgtactcaccttaagtgcgacgcctatt
ccgcgaacattgcacatgtcacttcttggtatccgtgacatttctaacctgactacccca
ccgcccgaccgacaggcaattgaaacgcgtatttcccgattcgatcccgaattgatccgg
tcagcaatagtgcgtgaactgaaccgaggaggccaggtttatttcgttcacaatcgggta
aaagatatccacacgattgccgaccgcctgctatccatcgtcccagaagcccggatcgga
atcggtcacggtcagatgaagggtgacgaactcgaagaagtcatgttggacttcgtgaac
cataagatcgacattctgctcagcacgacgatcatcgaaagcggcgttgatattcccaac
gccaatacgatgtttattcatcaagccggcaattacggactggcagacatgcatcagttg
cgcggtcgggtaggaagatataaacatcgcgcctactgctacttgctgttggaagaaggc
aagatcctcacgaccacttccgctaaacgattgaaggcaatcgaagaatacagcgaattg
ggtgccggattcaagatcgccatgcgcgacttggagattcgaggtgcgggcaacattatc
gggacggagcaatcgggacatatcgcttcggttggatacgagttgtattgccagttgctg
gagaatgctgttcggcatattcgcaacgaaccggtgcgagaacatcgtcacgttaacatc
gacctccctgtctctgcctacctggaaaactcttacattccacctggtcgcccgaagatc
gaagtctatcgtaaactatcaatggtccagactcttgaggaactggagcaattgcaggaa
gaaattcgtgatcgctttggtccattgacggaaagtacccaccggctgttcgagttgaag
catcttgaagtcctggcacgacaatgggacatcggtagtatctatttggagcagaggttc
gctgtatttaagtacaagcatgccattaagatagaacaattaaaagaacgacacggccga
acattccgtgttgccgatcgtaacacggcttactgggtgttaagcgatcggaatctcacg
gaagaggctctcctgcaagagttaaaatcggtgttgcagtaa
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