Polystyrenella longa: Pla110_34990
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Entry
Pla110_34990 CDS
T06945
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
plon
Polystyrenella longa
Pathway
plon03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
plon00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Pla110_34990 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
plon03021
]
Pla110_34990 (rpoC)
03400 DNA repair and recombination proteins [BR:
plon03400
]
Pla110_34990 (rpoC)
Enzymes [BR:
plon01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Pla110_34990 (rpoC)
Transcription machinery [BR:
plon03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Pla110_34990 (rpoC)
DNA repair and recombination proteins [BR:
plon03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Pla110_34990 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Peptidase_M23
RnfC_N
7TMR-HDED
Motif
Other DBs
NCBI-ProteinID:
QDU81754
UniProt:
A0A518CRC1
LinkDB
All DBs
Position
complement(4558005..4562285)
Genome browser
AA seq
1426 aa
AA seq
DB search
MSSAETSYDRVNDYGAIKISLASPHDIRSWSFGEIKKPETINYRTYRPERDGLFCERIFG
PEKDWECACGKYRGMKYKGMICDRCGVKVTHSRVRRKRMGHIELAAPVVHIWFFKSMPSR
LGALLNMKTTSLEKVVYFQDYAVTNPGETPLEFAQVMTEDEVRQAEENYGEGAFEVEMGA
EAVKKLLQALNLVELSDQIRADLKTTNSQQKRKDYIKRLKIIEALRDSDNKPEWMVLDVV
PVIPPDLRPLVLLDSGNFATSDLNDLYRRIINRNNRLKKLVDLNAPEVIIRNEKRMLQQS
VDALFDNNRCKRPVLGSSNRPLKSLTDMIKGKQGRFRENLLGKRVDYSARSVIVVGPELS
LNQCGLPKKIALELFQPFIIRRLKELGHADTIKSAKRMLERRDEDVWDILDEVITNHPVL
LNRAPTLHRMGIQAFEPVLVEGNAIRVHPLVCKGFNADFDGDQMAVHLPLSIEAQVEATT
LILSTNNIFSPANGAPIISASQDIVMGCYYMTVSKADRLGHGMIFASTDEVHLAFLQGKV
VRHTEIKVRLPHDKRVKGEGSDEFQAGGLVETTVGRVMFNDFLPSKMAFYNQTMKSRDLS
NVIADCYLELGKEATITLLDKMKETGFREATASGMSFATSDLKIPPEKEDIINKSEKVVL
DQLKLYQRGIITNQERYNKVLDTWMGAREEITKHMMVELENDYRDEGAYVNPIFLMAQSG
ARGGVEQMRQLAGMRGLMSKPNGEIIETPIKANFCEGLTVLEYFSSTHGARKGLADTALK
TADSGYLTRKLADVCQNMVITQNDCGTTQGITRGVVYRGEKVEVSLADAVRGRVSRTNIV
NPITDEVIVREGEMITVEMARKIQAMGLEKIQVRSPMTCESELGLCQLCYGMDLSTGDRV
EEGLAVGIVAAQSIGEPGTQLTMRTFHIGGTAHRDVEESEIQAKRAGRVKYARIRSVMNS
EGKNVVLTRNGEVIVVDNKERELEKYTIPNGATLMVNENDEIEAGQVLCQWDPHSVPILA
EVGGKVRFEDCIDGRSYRSEKDQSGHVRRTIIEHKTDLHPQIILEDGTGKILDFYYLPEG
ANIEVDEGSMVAAGTVLAKNPRESGGTQDITGGLPRVTELFEARKPKDPAVIAEIDGEVE
FVPERKRGKRVVIVRADDASEVEHIIPHGKQLLVHAGERVVAGDALVRGPLVPHDILRVS
GTEAVQQYLLHEIQNVYRSQRVEIDDKHIEIVVSQMLRKLKIENVGDTNSLPGILVDKFE
FRKLNEELKKSVRISDAGESEFIEGDVVPIAVLEEVNAHLEAAGQSPSTGVKPRPATAST
QLLGITKAAVQSESFISAASFQETTKVLTEAALAGKEDTLVGLKENVILGHLIPAGTGFR
THQDAEVRIRPEALEELQAEKERMLAARMDYLNEQSPEPPAPRSFE
NT seq
4281 nt
NT seq
+upstream
nt +downstream
nt
gtgagtagtgccgaaacatcctacgatcgagttaatgactacggtgccatcaagatcagc
ttggccagtcctcatgacatccgcagttggtcttttggggaaattaaaaagcccgagacg
atcaactaccgtacctaccgtcctgagcgcgatggtctattttgcgaacgaattttcgga
ccagaaaaggactgggaatgtgcctgcggtaaatatcgtggcatgaaatacaaaggtatg
atttgtgaccgttgtggagtgaaagtcacccacagccgtgtccgccgtaagcggatgggt
cacattgaactggccgccccggttgttcatatctggttcttcaaatcgatgccgagtcgc
ttgggcgctttgctcaacatgaaaacgacttcgcttgaaaaagtcgtctacttccaggat
tacgccgttacaaacccgggggaaacaccactcgagtttgcgcaggtaatgactgaggac
gaagttcgtcaggcggaagaaaattacggcgaaggtgccttcgaagtggagatgggtgct
gaagcggttaaaaagttgctgcaggctcttaacctggttgaactttctgaccagattcgt
gccgatctcaaaacgacgaacagccaacagaagcgtaaagactacatcaagcgtttgaaa
atcattgaagccttacgcgacagtgataacaaaccggagtggatggtcctcgacgttgtt
cctgtaattcctccggaccttcgcccgttggtactgctggattccggcaacttcgcaacg
agcgacctgaacgatttatatcggcgtattatcaaccggaataaccgtttgaaaaaactc
gtcgacttgaatgctcctgaggtcatcattcgtaacgaaaaacgaatgttgcagcagtct
gtcgacgctttgttcgacaacaaccgctgtaagcgaccagtgctcggttcctcgaatcgt
ccgctgaaatcgctgaccgacatgatcaaaggaaagcagggccggttccgtgagaacttg
ctgggtaaacgtgttgactactcggctcgttcggtcatcgtggtggggccggaactttcg
ttgaatcaatgtggtcttcccaagaagatcgcactcgagttgttccagcctttcattatt
cgtcggcttaaagaactcggtcacgccgatacgattaagagcgcgaagcgaatgctcgaa
cgacgtgacgaagatgtctgggacattctggacgaagtcatcacgaaccatcctgttcta
ttgaatcgtgctcctactttgcaccgtatgggtattcaggcgtttgagccggttctggtg
gaagggaacgcgattcgtgttcacccgctggtttgcaaaggtttcaatgccgactttgac
ggtgaccagatggccgttcacttgcccctctccattgaggctcaggttgaagcgaccact
ttgattctgtcgacgaacaatattttctcgccggcgaacggtgctccgattattagtgcg
tcccaagacatcgtcatgggctgttactacatgaccgtgagtaaagcggatcgccttggt
catggaatgatctttgcctcaactgacgaagtgcatctggcctttcttcagggcaaagtt
gttcgtcacacggaaatcaaagtacgcctccctcacgacaagcgtgtgaagggtgaggga
tcggacgagtttcaggcaggtggcttagttgaaacgaccgtgggtcgtgtcatgttcaat
gatttcctgccgtcgaagatggccttctacaaccagacaatgaaaagtcgcgacttgtcg
aacgtgatcgccgattgttacctcgagttgggtaaagaagcgacgattactctgttggac
aaaatgaaagagaccggcttccgcgaggcgactgccagcgggatgtccttcgcgacgagc
gaccttaaaataccgcccgaaaaagaagacatcatcaacaagtccgaaaaagttgttttg
gatcagttgaagttgtatcagcgcgggatcatcactaaccaggaacggtacaacaaagta
cttgatacgtggatgggtgctcgcgaagagatcaccaagcacatgatggtcgagcttgaa
aacgactaccgtgatgagggggcgtatgttaacccgatcttcctcatggctcagtctggt
gctcgtggtggtgtggaacaaatgcggcagctcgccggtatgcgtggtttgatgtcgaag
ccgaatggtgagatcatcgaaacccccattaaagcgaacttctgtgaaggtttgaccgtt
ctcgaatacttcagttcgactcacggtgcccgtaaaggtctggccgacaccgccctgaaa
acggcggacagcggttacttgacccgtaaactggctgacgtttgtcagaacatggttatt
actcagaacgattgcgggacgactcagggaattacccgtggggttgtttatcgcggtgaa
aaagtcgaagtctccctcgcggacgcagttcgtggtcgtgtttcacgaacgaatatcgtg
aacccgatcaccgacgaagtgatcgtacgggaaggcgagatgatcaccgttgaaatggct
cgcaaaattcaggcgatgggactggaaaaaatccaggtccgcagcccgatgacatgcgaa
tccgaactggggctctgtcagctttgctacggtatggacctgtctaccggcgaccgcgtc
gaagaaggtcttgctgtcggtattgttgccgctcagtcgatcggtgaaccgggaactcaa
ttgacgatgcgtacgttccacattggtggtacggctcaccgcgatgttgaagagagtgag
attcaggcgaaacgtgccggtcgtgttaaatacgctcgaattcgtagcgtaatgaacagt
gaaggcaaaaacgtcgtgttgacccgaaacggggaagtcatcgtcgtcgacaacaaagaa
cgtgagctggagaaatacaccatcccgaacggggcaaccctgatggtgaacgaaaacgat
gaaatcgaagccggtcaggttctctgtcaatgggaccctcactccgtgccgattctcgcc
gaagtcggtggtaaagttcgattcgaagactgtatcgatggtcgttcctatcggtctgaa
aaagaccaatccgggcacgttcgtcgtaccatcatcgagcacaaaaccgatctccatcct
cagatcattctggaagatggaaccgggaaaattctcgacttctattacttgcctgaaggg
gcaaacatcgaagtggacgaaggctccatggttgccgctggtacggtactggctaagaac
ccccgtgaatcgggtggtacgcaggacatcaccgggggtctgcctcgtgtgacggaactg
ttcgaagcacgtaaaccgaaagacccggcggtcatcgccgagatcgacggtgaagttgaa
ttcgtaccagaacgtaaacgtggtaaacgagtcgttatcgttcgagctgatgacgcaagt
gaagtggagcacatcattccacacggtaagcagctcctggttcacgcgggagagcgtgtg
gttgctggagacgcgctggtgcgtggtccgctggttcctcacgacattctgcgagtcagt
ggtactgaagccgtacagcaatacctgctgcacgaaattcagaacgtgtaccgttcgcag
cgagtggagatcgacgataagcacatcgaaatcgttgtttcccagatgcttcgtaaattg
aaaatcgaaaatgtcggcgacacgaattcccttccgggtattctggtcgacaaattcgaa
ttccgaaaattgaacgaagaactcaaaaagagcgtccggatttcggatgcgggagaatct
gagttcatcgaaggcgacgttgttccgatcgctgttctggaagaagtcaacgctcacttg
gaagctgcagggcagtcaccatccactggtgtcaaacctcgtccagcgaccgccagtact
cagttgcttggaattaccaaagcggctgttcagagcgaaagctttatctcggcagccagt
ttccaggaaacaaccaaggttcttaccgaggcggctctggccggcaaagaggacaccttg
gtgggtctgaaagagaacgtcattctgggtcacctgattccggctggtaccggttttcga
actcaccaggacgccgaagttcgaattcggcccgaggctctagaagagctgcaggctgaa
aaagagcgaatgttggcagcccgtatggactatctcaatgaacagagcccggaaccaccc
gctccgcggtcctttgagtaa
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integrated database retrieval system
