Polystyrenella longa: Pla110_36940
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Entry
Pla110_36940 CDS
T06945
Symbol
rtcB
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
plon
Polystyrenella longa
Brite
KEGG Orthology (KO) [BR:
plon00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
plon03016
]
Pla110_36940 (rtcB)
Enzymes [BR:
plon01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Pla110_36940 (rtcB)
Transfer RNA biogenesis [BR:
plon03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Pla110_36940 (rtcB)
Prokaryotic type
tRNA splicing ligases
Pla110_36940 (rtcB)
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Paralog
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GFIT
Motif
Pfam:
RtcB
B12-binding
JetD_C
Motif
Other DBs
NCBI-ProteinID:
QDU81942
UniProt:
A0A518CRT7
LinkDB
All DBs
Position
complement(4806725..4807909)
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AA seq
394 aa
AA seq
DB search
MCPLRKFQSIWGDKVEIDDQAHQQMRDACALPMAFGAALMPDAHVGYGLPIGGVLACENA
VIPYAVGVDIACRMKLSVFDLPVETLDTARDACKTALEKGTRFGVGAAYQRKQQHEVMDQ
DWAVTRITRERKDTAWKQLGTSGSGNHFVEFGILTIDVRDEDLGLDPGTYLSLLSHSGSR
GAGAAVCNTYSSIARANMPIGGEKFGRLAWLDLDSEAGQEYWAAMNLMGEYAAANHAVIH
RQVSRLLGAESIATVENHHNFAWIEEHHGKEVVVHRKGATPAGPGVLGVIPGSMADPAFV
VRGKGNVDSLHSASHGAGRRMSRRKAKDKYNFKSVRNTLRDRGIDVLSAGADEVPGVYKD
IREVMAAQEDLVETIARFDPKIVKMSGDGSRPED
NT seq
1185 nt
NT seq
+upstream
nt +downstream
nt
atgtgcccgttgagaaagttccaatcgatttggggtgataaggttgagatcgatgaccag
gctcatcagcagatgcgcgatgcgtgtgcattgccaatggctttcggtgcagctctgatg
cccgatgcacatgtagggtacgggttaccgatcggcggagttctcgcgtgtgaaaatgcg
gtgattccttacgccgtcggtgtcgatatcgcctgccgcatgaagttgtccgttttcgat
ctgccagtcgaaacgctggataccgcacgggacgcttgtaagacagccttggaaaaggga
actcgatttggtgtgggcgctgcgtatcagcggaagcagcaacacgaagtcatggatcag
gattgggctgtgacccgaattacgcgagaaagaaaggataccgcgtggaaacaactgggc
acgtctggatccggaaaccatttcgttgagttcggaatcctgacgattgacgttcgtgat
gaggatctcggattggatccgggtacgtatctgtctctgctatcgcatagcggtagccgg
ggagcgggagcagccgtgtgcaatacgtactcctctatcgcccgagcaaacatgcccatt
ggaggggaaaagtttgggcggttggcctggttggacctcgactcggaagcgggtcaggaa
tactgggcggcaatgaacctgatgggggaatacgccgccgccaaccatgccgtgatccat
cgtcaggtttcgaggcttctcggagctgagtcgatcgcgacggtagagaaccatcataac
tttgcctggattgaagagcatcatggaaaagaagtcgttgttcaccgcaagggagcaacg
cctgctggaccgggtgtgctgggagtgatcccgggatcaatggctgacccagctttcgtc
gtccgcgggaaaggaaatgtagatagcctgcattcggcatcgcatggagcaggacgtcga
atgtcgcggaggaaagcgaaagataagtataacttcaagtcggtgcgtaatacgcttcga
gatcgaggaattgacgtattgtccgcaggagcagatgaagttcccggtgtttacaaggat
atccgtgaggtaatggctgctcaggaggatctggtcgagacgatcgctcgattcgatccg
aaaattgtcaaaatgagtggagacggaagtcgaccagaagactga
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