Perognathus longimembris pacificus (Pacific pocket mouse): 125338472
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Entry
125338472 CDS
T08928
Symbol
Smarca2
Name
(RefSeq) probable global transcription activator SNF2L2 isoform X2
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop03082
ATP-dependent chromatin remodeling
plop04714
Thermogenesis
plop05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
125338472 (Smarca2)
09150 Organismal Systems
09159 Environmental adaptation
04714 Thermogenesis
125338472 (Smarca2)
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
125338472 (Smarca2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
plop03021
]
125338472 (Smarca2)
03036 Chromosome and associated proteins [BR:
plop03036
]
125338472 (Smarca2)
Transcription machinery [BR:
plop03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
125338472 (Smarca2)
Chromosome and associated proteins [BR:
plop03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
125338472 (Smarca2)
Chromatin remodeling factors
BAF complex
125338472 (Smarca2)
PBAF complex
125338472 (Smarca2)
GBAF(ncBAF) complex
125338472 (Smarca2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
SnAC
Bromodomain
HSA
BRK
QLQ
ResIII
HDA2-3
DEAD
Motif
Other DBs
NCBI-GeneID:
125338472
NCBI-ProteinID:
XP_048185238
LinkDB
All DBs
Position
1:99900423..100072109
Genome browser
AA seq
1571 aa
AA seq
DB search
MSTPTDPAAMPHPGPSPGPGPSPGPILGPSPGPGPSPGSVHSMMGPSPGPPSVSHPMPAM
GSTDFPQEGMHQLHKSMDAIHDKGIVEDIHCGSMKGTGMRPPHPGMGPPQSPMDQHSQGY
MSPHPSPLGAPEHVSSPISGGGPTPPQMPPSQPGPLIPGDLQAMNQTNRGPSPFSPVQLH
QLRAQILAYKMLARGQPLPETLQLAVQGKRTLPGMQQQQQQQPPQQPQPQPPQQPQQQQA
PQAQPQSQQPPAPVSYNRPSGSGLDVLSGGLSTPQKLPVPAPSGRPSPAPPATAQPPATA
VPGPSVQQPAPGQPSPVLQLQQKQSRISPIQKPQGLDPVEILQEREYRLQARIAHRIQEL
ENLPGSLPPDLRTKATVELKALRLLNFQRQLRQEVVACMRRDTTLETALNSKAYKRSKRQ
TLREARMTEKLEKQQKIEQERKRRQKHQEYLNSILQHAKDFKEYHRSVAGKIQKLSKAVA
TWHANTEREQKKETERIEKERMRRLMAEDEEGYRKLIDQKKDRRLAYLLQQTDEYVANLT
NLVWEHKQAQAAKEKKKRRRRKKKAEENAEGGESALGPDGEPIDESSQMSDLPVKVTHTE
TGKVLFGPEAPKASQLDAWLEMNPGYEVAPRSDSEESDSDYEEEDEEEESTRQETEEKIL
LDPNSEEVSEKDAKQIIETAKQDVDDEYSMQYSARGSQSYYTVAHAISERVEKQSALLIN
GTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLIIVP
LSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQLRSGKFNVLLTTYEYIIKDKHILA
KIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLPT
IFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPEK
VEYVIKCDMSALQKILYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYM
FQHIEESFAEHLGYSNGVINGAELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTI
MEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTV
VIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA
GMFDQKSSSHERRAFLQAILEHEEENEEEDEVPDDETLNQMIARREEEFDLFMRMDMDRR
REDARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEEEEKIFGRGSRQRRDVDYSDALT
EKQWLRAIEDGNLEEMEEEVRLKKRKRRRNVDKDPVKEDVEKAKKRRGRPPAEKLSPNPP
KLTKQMNAIIDTVINYKDSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNH
KYRSLGDLEKDVMLLCHNAQTFNLEGSQIYEDSIVLQSVFKSARQKIAKEEESEDDSNEE
EEEEEEEESESEAKSVKVKIKLNKKDEKGRDKGKGKKRPNRGKAKPVVSDFDSDEEQDEN
EQSEASGTDDE
NT seq
4716 nt
NT seq
+upstream
nt +downstream
nt
atgtccacgcctacagacccagctgcgatgccccaccctgggccctcgccagggcctggg
ccttcccctggaccaattctgggacctagtccaggaccaggaccctccccaggttctgtc
cacagcatgatgggcccaagtcctgggcctcccagtgtttcacatcccatgccggcaatg
ggctctacggatttcccacaggaaggcatgcatcaactgcataagtccatggatgcgata
catgacaaggggattgtggaggatatccactgtggatccatgaagggcactggtatgcgg
ccacctcaccctgggatgggccctccacagagtccaatggatcaacatagccaaggttat
atgtctccacatccatctccattgggagccccagagcatgtctccagccctatatctgga
ggaggcccaactccaccccagatgccaccgagccagccaggacctctcatccccggcgat
ctgcaggccatgaaccagaccaacagaggcccatcgcctttcagtcctgtccagctgcat
cagcttcgcgctcagattttagcttacaaaatgttggccaggggccagccgctccctgaa
acactgcagcttgcagtgcaggggaaaaggactttgcctggcatgcagcagcaacagcag
cagcagccgccgcagcaaccacagccgcagccgcctcagcagccgcagcaacaacaggcg
cctcaggcacagccgcagtcgcagcagccaccagccccggttagctacaacagaccatct
ggctccgggcttgatgtgttgagtggtggcctcagcaccccacagaaactgccagtgcca
gcgcccagtggccgtccttcacctgcacctccagccactgcacagccacctgcgactgct
gtgcctgggccctctgtgcagcagcctgccccggggcagccctcacctgtcctgcagctg
caacagaagcagagccgcatcagccccatccagaaaccacaaggcctggacccagtggag
atactccaggaacgggagtacagacttcaggctcgcatagctcataggatacaagaactg
gaaaatctacctggctctctgccaccagatttacgaaccaaagcaactgtggaactgaaa
gcccttcggttactcaatttccagcgtcagctgagacaggaggtggtggcctgcatgcgt
agagacaccaccctggagacggctctcaactccaaagcttacaaacggagcaagcgtcag
actctgagagaagcccgcatgacggagaagctggaaaagcagcagaagattgagcaggag
aggaagcgacggcagaaacaccaggaatatctgaacagtatcttgcaacatgcaaaagat
tttaaggaataccatcgctctgtggctggcaagatccagaagctttccaaagcagtggca
acttggcatgccaacactgaaagggagcagaagaaggagacagaacggattgaaaaggag
agaatgcggagattgatggcagaagatgaagagggatataggaaactaattgaccaaaag
aaggacaggcgtttagcttaccttttacagcagactgatgagtatgtggccaatctaacc
aacctggtttgggagcacaagcaggcccaagcagccaaagagaagaagaagaggagaaga
aggaagaagaaggccgaggagaatgccgagggaggggagtctgccctgggaccagatgga
gagccgatagatgagagcagtcagatgagtgacctgcctgtcaaagtgactcacacagaa
actggcaaggtcctgtttggaccagaagcacccaaagccagtcagctggatgcctggttg
gaaatgaatcctggttatgaagttgcccctagatctgatagtgaagaaagtgactctgat
tacgaggaggaggatgaggaagaagaatccactaggcaggaaactgaagaaaaaatactt
ctggatccaaacagtgaagaagtttctgagaaggatgctaagcagatcattgaaacagcc
aagcaagacgtggatgatgaatacagcatgcagtacagcgccagaggatcgcagtcgtac
tacactgtggcccatgccatctcagagagggtggagaagcagtctgccctcctcattaat
ggaaccctaaagcattatcagctccagggcctggaatggatggtttccctgtataataac
aatttgaacggaatcttagctgatgaaatggggctaggcaagaccatacagaccattgca
ctcatcacttatctgatggagcacaaaagactcaatggcccctatctcatcattgttccc
ctctcgactctatctaactggacatacgaatttgacaagtgggctccttctgtggtgaaa
atttcttacaagggtacccctgccatgcgccggtccctggtcccccaactacgaagtggc
aaattcaatgtccttctgactacttatgagtacattataaaagacaagcacattcttgca
aagatccggtggaaatacatgatagtggatgaaggccaccgaatgaagaaccatcactgc
aagctgactcaggtgttgaacactcactatgtggcccctagaaggatcctcttgactggg
acgccattgcagaacaagctccctgaactttgggccctcctcaacttcctcctccctaca
atttttaagagctgcagcacatttgaacagtggtttaatgctccatttgccatgactggt
gaaagggtggacttaaatgaagaagaaactatactgatcatcaggcgtcttcataaggtc
ctgagaccctttttactgagaagactgaagaaagaagttgaatctcagcttccagaaaaa
gttgaatatgtgatcaaatgtgacatgtcagctctgcagaagattttgtatcgtcatatg
caagccaaggggatcctcctcacagatggctctgagaaagacaagaaggggaaaggaggt
gcaaagacacttatgaacactatcatgcagttgagaaaaatctgtaatcacccttacatg
ttccagcacattgaggagtcctttgctgaacacctgggctactcaaatggggtcatcaat
ggggctgagctgtatcgggcttcaggaaagtttgagctacttgatcgcattctaccaaaa
ctgagagcaactaaccaccgtgtgctgcttttctgccagatgacatctctcatgaccatc
atggaggactactttgcttttcggaacttcctttacctgcgtctagatggcaccaccaag
tctgaagatcgtgctgctttgctgaagaaattcaatgagcctgggtcccagtatttcatt
ttcttgctgagcacacgagctggaggcctgggtttaaatctccaggcagctgacacggtg
gtcatctttgacagcgactggaatcctcatcaggatctgcaagcacaagaccgagctcac
cgcattggtcaacagaacgaggtccgggtgctgagactctgcaccgtgaacagtgtggag
gagaagattcttgcagctgccaaatacaagctgaacgtggatcaaaaagttatccaggca
ggcatgtttgatcagaagtcttcaagccacgagcggagggcattcctgcaggccatattg
gaacatgaagaggaaaatgaggaagaagatgaagtaccagacgacgagactctgaaccaa
atgattgctcgacgcgaggaagaatttgacctttttatgcgcatggacatggaccggcgg
agagaagatgctcgaaatccaaagcgtaaaccgcgcctaatggaggaagatgagctgccc
tcttggattattaaggatgatgctgaagtagaaaggctcacgtgtgaagaagaggaagag
aaaatatttggcaggggctctcgccagcgccgcgatgtggactacagcgatgccctcaca
gagaagcaatggctccgggccatcgaagacggcaatttggaagaaatggaagaggaagta
cggcttaagaaaagaaaaaggcgaagaaatgtggataaagatcccgtgaaggaagatgtg
gaaaaagctaagaagagaagaggccgccctccagctgagaaactctcaccaaatccgccc
aaactgacaaagcagatgaatgctatcatcgatactgttataaactacaaagacagttca
gggcgacagctcagtgaagtcttcattcagttaccttccagaaaagagttaccagagtac
tatgaattaattaggaagccagtggatttcaaaaaaatcaaggagagaattcgtaaccat
aagtaccggagcctgggcgacctggagaaagacgtcatgcttctctgtcacaatgcacag
acattcaacttagagggatcccagatctatgaagattccatcgtcttacagtcagtgttt
aagagtgctcggcagaaaattgccaaagaagaagagagtgaggatgatagcaatgaggaa
gaggaagaagaagaggaagaggagtccgagtcagaggcaaaatctgttaaggtgaaaatc
aagcttaataaaaaagacgagaaagggcgggacaaaggaaaaggcaagaaaaggccaaat
cgagggaaagccaaacctgttgtgagtgattttgacagtgatgaagagcaggatgaaaac
gaacagtcagaagcaagtgggactgatgatgagtga
DBGET
integrated database retrieval system
