Perognathus longimembris pacificus (Pacific pocket mouse): 125338499
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Entry
125338499 CDS
T08928
Symbol
Trpm1
Name
(RefSeq) transient receptor potential cation channel subfamily M member 1 isoform X1
KO
K04976
transient receptor potential cation channel subfamily M member 1
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
plop04040
]
125338499 (Trpm1)
Ion channels [BR:
plop04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
125338499 (Trpm1)
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
LSDAT_euk
TRPM2
TRPM_tetra
LSDAT_prok
Ion_trans
EBNA2_Core
Glutaredoxin2_C
Motif
Other DBs
NCBI-GeneID:
125338499
NCBI-ProteinID:
XP_048185286
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All DBs
Position
20:complement(38898676..38967571)
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AA seq
1662 aa
AA seq
DB search
MGSPKKMSSSFKRGSLKSSTSGSQKGQKAWIERTFCKRECIFIIPSTKDPNRCCCGQFTN
QHIPPPPSATPSKNGEENKQVEAQPEKWTVGKHTQSYPTDSYGILEFQGGGYVNKAMYIR
VSYDTKPDFLLHLMVKDWQLELPKLLISVHGGLQNFEMQPKLKQVFGKGLIKAAMTTGAW
IFTGGLSTGVISHVGDALKDHSSKSRGRVCAIGIAPWGMVENKEDLIGRDVTRVYQTMSN
PLSKLSVLNNSHTHFILADNGTLGKYGAEVKLRRQLEKHISLQKINTRLGQGVPVVGLVV
EGGPNVVSVVLEYLREDPPVPVVVCDGSGRAADILSFAHKYCEEGGGINESLRDQLLVTI
QKTFNYSKSQSHQLFAIIMECMKKKELVTVFRMGCEGQQDVEMAILTALLKGTNASAPDQ
LSLALAWNRVDIARSQIFVFGPHWPPLGSLAPPVDSKATEKEKKPPTATTKGRGKGKGKK
KGKVKEEVEEETDPRKIELLNWVNALEQAMLDALVLDRVDFVKLLIENGVNMQHFLTIPR
LEELYNTRLGPPNTLHLLVRDVKKSNLPPDYHISLIDIGLVLEYLMGGAYRCNYTRKSFR
TLYNNLFGPKRPKALKLLGMEDDEPPTKGKKKKKKKKEEEIDIDVDDPAVSRFQYPFHEL
MVWAVLMKRQKMAVFLWQRGEESMAKALVACKLYKAMAHESSESELVDDISQDLDNNSKD
FGQLAVELLDQSYKHDEQIAMKLLTYELKNWSNSTCLKLAVAAKHRDFIAHTCSQMLLTD
MWMGRLRMRKNPGLKVIMGILIPPTILFLEFRTYDDLSYQTSKENEDGKEKEEENVDANA
DAGSRKGDEENEHKKQRSIPIGTKICEFYNAPIVKFWFYTISYLAYLLLFNYIILVRMDG
WPSFQEWIVISYIVSLALEKIREILMSEPGKLSQKIKVWLQEYWNITDLVAISMFMVGAI
LRLQNQPYMGYGRVIYCVDIILWYIRVLDIFGVNKYLGPYVMMIGKMMIDMLYFVVIMLV
VLMSFGVARQAILHPEEKPSWKLARNIFYMPYWMIYGEVFADQIDRKNRIHMYAMEINPP
CGENLYDEEGKRLPPCIPGAWLTPALMACYLLVANILLVNLLIAVFNNTFFEVKSISNQV
WKFQRYQLIMTFHDRPVLPPPMIILSHIYIIIMRLSGRCRKKREGDQEERDRGLKLFLSD
DELKRLHEFEEQCVQEHFREKEDEQQSSSDERIRVTSERVENMSMRLEEINERENFMKTT
LQTVDLRLSQLEELSSRMVNALENLAGIDRSDLIQSRSRASSECEATYLFRQSSINSSDG
YSLYRYHFNGEELLFEDTSVSVPPGTGLRKKTCSFRVKEDKDSKVHLAPERQTSLHLASG
PSPPATPDRSQRKVDNTTATSEPKLGPDIGISTLDDERQADDAQQEEMMSSGLNATDVIS
GQKSDFPNTQLTVETTKIEGTFSYPSEESKITRYYPDDTLNTYKTMKSRSFVYSEGRRLV
GGFHNWGAEYSSIMDQTCPSSVQQWTTEWKYEVQKITRSRSTDIPCRVSEAAVQAEQREQ
STDTEDDNSFSQKGPQISPIVLPARDRTGKENLLSVKPHQTLGFPSPRSRSFHGHPRTAK
CIQGKLDRSGHASSASNLVVVSSVTMEERKVKQEKTSTETDC
NT seq
4989 nt
NT seq
+upstream
nt +downstream
nt
atgggctccccgaagaagatgagcagctccttcaagcggggttccctcaagagctccaca
tcggggtcccagaagggtcaaaaagcttggattgagaggaccttttgcaaacgtgaatgt
atctttatcattcccagcacaaaagaccctaacaggtgttgctgcggccagttcaccaac
cagcacattccccctccgccaagtgcgactcccagcaagaatggcgaggaaaacaaacag
gtggaagcccagcccgaaaagtggactgttggcaaacacacccagagctacccaacagat
tcctatgggattctggaattccagggtggcggatatgtcaataaagccatgtacatccgc
gtgtcctacgataccaagcccgatttcctgcttcatctcatggtgaaggactggcagctg
gagctccccaagctcttaatatcagtgcatggaggcttgcagaacttcgagatgcagccg
aagctgaagcaggtgtttggcaaaggcctgatcaaggccgccatgaccacgggggcctgg
atcttcacaggcggcctcagcactggtgtcatcagccacgtgggggacgccctgaaagac
cactcctccaagtccagagggcgcgtctgcgctatagggattgctccgtggggcatggtg
gagaacaaggaagacctgatcgggagggatgtcacaagagtgtaccagacgatgtccaac
ccgctgagtaagctgtctgtactcaacaactctcacacgcacttcatcctggccgacaat
ggcactctgggcaagtacggtgccgaggtgaagttgcggcggcagctggagaagcacatc
tctctgcagaagatcaacacgagactgggccagggggtgcccgttgtgggcctggtggtg
gaagggggccccaacgtggtttccgtggtcttggaatacctccgagaggaccctcccgtc
cctgtggtggtttgtgatggcagcggacgagcggcagacattttgtccttcgctcacaaa
tactgcgaagaaggagggggcataaacgagtccctcagggatcagcttctcgtcaccatt
cagaaaacgtttaattacagcaagagccagtcccatcaactgttcgcaatcatcatggag
tgcatgaagaagaaagaacttgtcaccgtgtttagaatgggctgtgaggggcagcaggac
gtggagatggccattttaactgctctcctgaaaggaaccaatgcttccgctcctgaccag
ctgagcttggctctagcttggaaccgggtggacatcgcgcgaagccagatcttcgtcttc
gggccccattggccgcccctgggtagcctggcccctccagtggacagcaaagctacagaa
aaggagaagaagccacccacagccaccaccaaggggagaggaaaaggaaaaggcaagaag
aaagggaaagtgaaggaggaagtagaggaggaaacggacccccggaagattgagctgctg
aattgggtgaatgctttagagcaagcaatgctggatgcgctagtcttagatcgagtggac
ttcgtgaagctcctgattgaaaatggagtgaatatgcagcatttcctcaccattcccagg
ttggaggagctgtataacacaaggctgggtccaccaaacacacttcacctgctggtgaga
gatgtaaaaaagagcaaccttcctcccgattaccacatcagccttatcgacatcgggctg
gtgctggagtacctcatgggcggagcctaccgctgcaactacacccggaaaagttttcgg
accctttacaacaacttgtttgggcctaagaggcctaaagctttgaaacttctgggaatg
gaggacgatgaacctcccaccaaagggaagaagaagaaaaagaagaaaaaggaggaagag
atcgacatcgatgtggacgacccggctgtgagtcggttccagtacccgttccacgagctg
atggtgtgggccgtgctgatgaagcgccagaagatggccgtcttcctctggcagaggggg
gaggagagcatggccaaggccttggtggcctgcaagctctacaaggccatggcccacgaa
tcctcggagagcgagctggtggatgacatctcccaggacctggacaataactccaaagac
ttcggccagcttgcggtggagctgttagaccagtcctataagcatgatgagcagattgcc
atgaaacttctgacctatgaactaaaaaactggagcaattcaacctgcctcaagctggct
gtggcagcgaaacatcgagacttcattgcccatacctgtagtcagatgttactgactgat
atgtggatgggaaggcttcgaatgaggaagaaccctggcctgaaggttatcatgggaatt
ctcatcccccccaccatcttgtttttggaattccgaacatacgatgatctctcctatcaa
acatctaaggaaaatgaagatggcaaagaaaaagaagaagagaatgtggatgcgaatgcg
gatgctgggtccagaaagggggatgaggagaacgagcacaaaaagcagagaagtattccc
atcggaacaaaaatctgtgaattctacaatgctcccattgtcaagttctggttttacaca
atttcgtacctggcctacctgctgctgtttaactacatcatcctggtgcgcatggacggc
tggccctccttccaggagtggattgtcatctcctacatcgtgagcctggcactagagaaa
atacgtgagattctcatgtcagaacctggcaaactcagccagaaaatcaaagtatggctt
caggaatactggaacatcacagaccttgtggccatttccatgttcatggttggagctatc
cttcgcctacagaaccagccctatatgggctatggccgggtcatctactgtgtggacatc
atcctttggtatatccgagtcttggatatttttggtgtcaacaagtaccttggcccttat
gtgatgatgattgggaagatgatgattgacatgctgtacttcgtggtcatcatgttggtt
gtgttgatgagtttcggtgttgctcgtcaggccattttgcaccctgaggagaagccttct
tggaaactggcccggaacatcttctacatgccttactggatgatctacggagaggtgttt
gcagaccagattgaccgtaagaatagaattcatatgtacgccatggaaattaatcctcct
tgtggtgaaaacctctatgatgaagagggcaagcggctacccccctgcatcccgggtgcc
tggctcacccctgccctgatggcctgctacctgctggtggcaaacattctgctcgtcaac
ctgctgattgctgttttcaacaatactttctttgaagtcaagtcaatatccaatcaggtg
tggaagttccaaagatatcagctgatcatgacatttcacgacaggcctgtcctgccccca
ccgatgatcattctcagccacatctacatcatcattatgcgtctcagtggccgctgcagg
aagaaaagagagggggaccaagaggaacgggaccgtgggttgaagctgttcctcagcgat
gatgagctgaagagactgcatgagtttgaggagcaatgtgtgcaggagcacttccgggag
aaggaggatgagcagcagtcttccagtgatgagcgcatccgggtcaccagtgagagagtt
gaaaatatgtccatgaggttggaagaaatcaatgaaagagaaaattttatgaaaacgacc
ctacagactgttgacctccgactttctcaacttgaagaactctctagcaggatggtgaat
gctctggaaaatctggcaggcatcgacagatctgacctgatccagtcgaggtcccgagct
tcctctgaatgcgaggccacctaccttttccgccaaagcagcatcaatagctctgacggc
tacagcctgtaccgctaccatttcaatggggaagaactgctgttcgaagacacctctgtc
tccgtgcctccagggacaggcctccggaagaaaacctgttccttccgggtgaaggaagac
aaggactctaaagtccatctagctccagaaagacagactagcctccacttagcatcgggc
cccagtcccccagcaaccccagatcgcagtcaacgtaaagtagataacaccacagccact
tcagagcccaaattaggaccagacatcggcatttcaaccctagacgatgaaaggcaggcc
gacgatgctcaacaagaggaaatgatgtcctctggtttaaatgcaacagatgtgatatct
ggacagaaatcagattttccgaatactcaactcacagtagaaacgaccaagatagagggc
actttttcctatccatcagaagaaagcaaaatcacacgctattacccagatgacacgctc
aacacttacaaaacaatgaaatccagaagctttgtgtattctgagggaagaagactggtc
ggtgggtttcacaactggggtgcggaatacagttcaatcatggatcaaacctgtccctcg
tctgttcagcaatggacaacagagtggaaatacgaagttcagaagatcacgcgttcccgt
agcacagatatcccctgtagggtatctgaggctgcagtccaagctgagcaaagagagcaa
tccacagatacggaagatgacaatagcttttctcaaaaaggcccccagatctcccccata
gtcctcccggctagggatagaactggaaaggaaaacttactgtcagtgaaaccacaccaa
actttgggattcccatcgccaaggtcgagaagtttccatggccatcccaggactgccaag
tgcattcaggggaaactagatagatctggacatgccagcagtgccagtaacttagtagtt
gtgtcttcagttaccatggaagaaagaaaggtaaagcaagagaaaacttccactgaaact
gactgctag
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