Perognathus longimembris pacificus (Pacific pocket mouse): 125338510
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Entry
125338510 CDS
T08928
Symbol
Pold1
Name
(RefSeq) DNA polymerase delta catalytic subunit
KO
K02327
DNA polymerase delta subunit 1 [EC:
2.7.7.7
]
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop03030
DNA replication
plop03410
Base excision repair
plop03420
Nucleotide excision repair
plop03430
Mismatch repair
plop03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
125338510 (Pold1)
03410 Base excision repair
125338510 (Pold1)
03420 Nucleotide excision repair
125338510 (Pold1)
03430 Mismatch repair
125338510 (Pold1)
03440 Homologous recombination
125338510 (Pold1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
plop03032
]
125338510 (Pold1)
03400 DNA repair and recombination proteins [BR:
plop03400
]
125338510 (Pold1)
Enzymes [BR:
plop01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
125338510 (Pold1)
DNA replication proteins [BR:
plop03032
]
Eukaryotic type
DNA Replication Elongation Factors
DNA polymerase delta complex
125338510 (Pold1)
DNA repair and recombination proteins [BR:
plop03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
DNA polymerase delta complex
125338510 (Pold1)
MMR (mismatch excision repair)
DNA polymerase delta complex
125338510 (Pold1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_B
DNA_pol_B_exo1
zf-C4pol
DNA_pol_B_2
Motif
Other DBs
NCBI-GeneID:
125338510
NCBI-ProteinID:
XP_048185298
LinkDB
All DBs
Position
20:23756053..23768739
Genome browser
AA seq
1106 aa
AA seq
DB search
MDSKRRQGPGPEVPPKKARGGLWDTYEPPASPLEEDLALLEEMEAEHRLREQEEEQLQQA
LEGAPDGQFPSTAVDPRWLRPTPPPLDPKTEPLIFQQLEIDHYVGPAWPLPGGPPPSRGS
VPVLRAFGVTDEGVSVCCHIHGFAPYFYTPAPPGFGSEHLSELQRELSAAISRDQRGGSQ
LTGPPVLAVELCSRESMFGYHGHGPSPFLRITLALPRLVAPARRLLEQGIRVAGLGTPSF
APYEANVDFEIRFMVDTDIVGCNWLELPPGKYFLRPDKKATLCQLEADVLWSDVVSHPPE
GPWQRLAPLRVLSFDIECAGRKGIFPEPERDPVIQICSLGLRWGESEPFLRLALTLRSCA
PILGANVQSYEREEDLLQAWATFVRTMDPDVITGYNIQNFDLPYLISRAQTLKVKSFSLL
GRVTGLRSNIRDSSFQSRQMGRRDSKVVSMVGRVQMDMLQVLLREYKLRSYTLNAVSFHF
LGEQKEDVQHSIITDLQNGNEQTRRRLAVYCLKDAFLPLRLLERLMVLVNAVEMARVTGV
PLGYLLSRGQQVKVVSQLLRQARCQGLLMPVVKTEGGEDYTGATVIEPLKGYYDVPIATL
DFSSLYPSIMMAHNLCYTTLLRPGAAQKLGLAADQFIKTPTGDEFVKASVRKGLLPQILE
NLLSARKRAKAELAQETDPLRRQVLDGRQLALKISANSVYGFTGAQVGKLPCLEISQSVT
GFGRQMIEKTKQLVESKYTMENGYSGNAKVVYGDTDSVMCRFGVSSVAEAMALGREAADW
VSGHFPSPIRLEFEKVYFPYLLISKKRYAGLLFSSRPDTHDRMDCKGLEAVRRDNCPLVA
NLVTASLRRLLVDRDPEGAVAHAKDVISDLLCNRIDISQLVITKELTRATADYAGKQAHV
ELAERMRKRDPGSAPSLGDRVPYVIIGAAKGVAAYMKSEDPLFVLEHSLPIDTQYYLEQQ
LAKPLMRIFEPILGEGRAEAVLLRGDHTRCKTVLTGKVGGLLAFATRRVCCIGCRTVLSH
QGAVCKFCQPRESELYQKEVSHLNALEERFSRLWTQCQRCQGSLHEDVICTSRDCPIFYM
RKKVRKDLEEQEQLLRRFGPPGPEAW
NT seq
3321 nt
NT seq
+upstream
nt +downstream
nt
atggacagcaagcggcggcaaggcccaggacccgaggtgcccccaaagaaggcacgaggg
ggcctctgggacacctatgagcccccagcatccccgttggaggaggacttggctctgctg
gaagagatggaggcggagcacaggctgcgggagcaggaggaggagcagctgcagcaggcc
ctggagggcgctccagatggccagttcccttcaacagccgtggatccccgctggctacga
cccaccccaccccccctggaccccaaaacagagcccctcatcttccagcagctagaaatc
gaccactatgtgggcccagcatggcccctgccagggggacccccaccttcccgtggctct
gtgcctgtgctccgtgccttcggggtcactgatgagggtgtgtctgtgtgctgccatatt
catggctttgcaccctacttctacactcctgcacctcccggttttggctcagagcacctg
agtgagctgcagcgagagctgagcgcggccatcagccgggaccagcgcgggggctcacag
ctcactgggccccccgtgttggctgtggagctgtgctcccgggagagcatgttcgggtac
cacggacacggcccctccccattcctgcgcatcaccctggccctgccccgcctggtggcg
cccgcccgccgcctgctggagcagggcatccgcgtggcaggcctgggcacccccagcttc
gcaccctacgaggccaacgtggactttgagattcggttcatggtggacactgacatcgtc
ggctgcaactggctggagctcccgcctgggaagtactttctgcggcctgataagaaggcc
accctgtgtcagctagaggccgacgtgctgtggtcagatgttgtgagccaccccccagaa
gggccatggcagcgccttgcacccctgcgcgtgctcagcttcgacatcgagtgtgcgggc
cgcaaaggcatcttccctgagcctgagcgggaccctgtgatccagatctgctcactaggc
ctgcgctggggcgagtcagagccctttctgcgcctggcacttaccctgcggtcctgtgcc
cccatcctgggtgctaacgtgcagagctatgagcgggaagaggacctgctgcaggcctgg
gccacctttgtccgcaccatggaccctgatgtcatcacaggctacaacattcagaatttc
gacctcccctacctcatctcccgggcccagaccctcaaggtgaagtccttctccttgctg
ggccgtgtgactggccttcgctccaacatccgggactcctcgttccagtcgaggcagatg
ggcaggcgggacagcaaggtggtcagcatggtgggccgtgtgcagatggacatgctgcag
gtgttgctccgggagtacaagctgcgttcgtacacactcaacgctgtcagcttccacttc
ctgggcgagcaaaaggaggatgtgcagcacagcatcatcaccgacctgcagaatgggaat
gagcagacacgccggcggctggccgtgtactgcctgaaggacgccttcctgccgctgcgc
ctgctcgagcggctcatggtgctggtgaacgcagtggagatggcacgggtcaccggtgtg
cccctcggctacctgctcagccggggccagcaggtcaaggtggtgtcccagctgctgcga
caggcgcggtgtcaggggctgctgatgcccgtggtgaagacggagggcggcgaggactac
accggagccaccgtcattgagcccctcaaagggtactacgatgtgcccatcgccaccctg
gacttctcctcgctgtacccgtccatcatgatggcgcacaatctgtgctataccacgctc
ctgcggcctggggctgcacagaaactcggcctggctgcagaccagttcatcaagacgccc
actggggacgagtttgtgaaggcgtcggtgcggaagggcctgctgccccagatcctcgag
aacctgctcagcgcccgcaagagggccaaggctgagctggctcaggagacggacccgctg
cggcggcaggttctggatgggcggcagctggcgctgaaaataagcgctaactccgtgtat
ggcttcaccggggcccaggtgggcaagttgccctgcctggagatctcgcagagcgtcacc
ggcttcgggcggcagatgatcgagaagaccaagcagctggtggagtccaagtacaccatg
gagaatggctacagcggcaatgccaaggtggtatatggcgacacagactcggtcatgtgc
cggttcggtgtgtcctcagtggccgaggccatggccctggggcgcgaggctgcagactgg
gtgtctggtcacttcccatcccccatccggctggaatttgagaaggtctatttcccctac
ctgctcatcagcaagaagcgctatgccggcctgctcttctcctcccgccctgacacccac
gaccgcatggactgcaagggcctggaggccgtgcgcagggacaactgccccctggtggcc
aaccttgtcactgcctccctgcgccgcctgctcgtggaccgagaccctgagggcgccgtg
gcccacgccaaggacgtcatctcagacctgctgtgcaaccgcatcgacatctcgcaactg
gtcatcaccaaggagctgacccgcgcaacggccgactatgcggggaagcaggcgcacgtg
gagctggctgagaggatgaggaagcgcgaccctgggagcgcgcccagcctgggcgaccgc
gtcccctacgtcatcatcggcgcagccaagggcgtggcagcctacatgaagtctgaggac
cccctcttcgtgctggagcacagcctgcccatcgacacacagtactacctggagcagcag
ctggccaagccgctcatgcgcatcttcgagcccatcctaggcgagggccgtgccgaggcc
gtgctgctgcggggcgaccacacgcgctgcaagacagtgctcaccggcaaggtgggcggc
ctcctggccttcgctacgcggcgggtttgctgcattggctgccgcacggtgctcagccac
cagggagccgtgtgcaagttctgccagccccgtgagtcagagctgtatcagaaggaggtg
tcgcacctgaacgccctagaggagcgcttctcccgcctctggacgcagtgccagcgctgc
cagggcagtctgcacgaggacgtcatctgcaccagccgggactgccccatcttctacatg
cgcaagaaggtgcgcaaggacctggaggagcaggagcagctgctgcgccgcttcgggccg
cccggccccgaggcctggtga
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