Perognathus longimembris pacificus (Pacific pocket mouse): 125339078
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Entry
125339078 CDS
T08928
Symbol
Cnot3
Name
(RefSeq) CCR4-NOT transcription complex subunit 3 isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125339078 (Cnot3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
plop03019
]
125339078 (Cnot3)
Messenger RNA biogenesis [BR:
plop03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
125339078 (Cnot3)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
125339078 (Cnot3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
Cluap1
DUF4407
PI3K_P85_iSH2
Motif
Other DBs
NCBI-GeneID:
125339078
NCBI-ProteinID:
XP_048186139
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All DBs
Position
20:25210010..25224423
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AA seq
752 aa
AA seq
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MADKRKLQGEIDRCLKKVSEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRD
QIKTWVASNEIKDKRQLIDNRKLIETQMERFKVVERETKTKAYSKEGLGLAQKVDPAQKE
KEEVGQWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKDQKQDRIEGLKRHIEKHRYH
VRMLETILRMLDNDSILVDAIRKIKDDVEYYVDSSQDPDFEENEFLYDDLDLEDIPQALV
ATSPPSHSHMEDEIFNQSSSTPTSTTSSSPIPPSPANCTTENSEDDKKRGRSTDSEVSQS
PAKNGSKSVHSNQHPQSPAVPPTYPSGPPPATAALSTTPGNNGASSPAAPPSALGPKASP
APSHSSGTPAPYAQAVAPPTASGPNTAQPRPPSAQPSGAGGGGGAGSGGSSNSGTGGGSG
KQNGATSYSSVVADSPAEVALSSSGGNSASSQALGPPAGPHNPPPSTSKEPSASAPTGAG
SVAPGSGNNSGGPSLLVPLPVNAPSSPTPSFSEAKTAGALLNGPPQFSTAPEVKAPEPLS
SLKSMAERAAISSGIEDPVPTLHLTERDIILSSTSAPPTSAQPPLQLSEVNIPLSLGVCP
LGPVPLTKEQLYQQAMEEAAWHHMPHPSDSERIRQYLPRNPCPTPPYHHQMPPPHSDTVE
FYQRLSTETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQ
GTYIYFDYEKWGQRKKEGFTFEYRYLEDRDLQ
NT seq
2259 nt
NT seq
+upstream
nt +downstream
nt
atggcggacaagcgcaaactccaaggtgagattgatcgctgcctcaagaaggtgtccgag
ggcgtggagcagtttgaagatatttggcagaagctccacaatgcagccaacgcaaaccag
aaagaaaagtatgaggctgacctaaagaaggagattaagaagctacaacggctgagggac
cagatcaagacatgggtggcatccaatgagatcaaggacaagaggcagctcatcgataac
cgcaagctcatcgagacgcaaatggaacggttcaaagttgtggaacgagagaccaagacc
aaagcttatagcaaggagggcctgggcctggcgcagaaggtggaccctgcccagaaggag
aaggaagaagttggccagtggctcacgaacaccatagacaccctaaacatgcaggtggac
cagtttgagagtgaggtggaatcactgtcggtacagacacgcaagaagaagggcgacaag
gatcagaagcaggaccggattgagggcttaaagcggcacatcgagaagcaccgctaccat
gtgcgcatgctggagaccatcctgcgcatgctggacaatgactccatccttgtcgacgcc
atccgcaagatcaaggacgacgtcgaatactacgttgactcgtcccaggaccccgacttc
gaagagaacgagttcctctatgacgacctggacctcgaggacattccacaggcgctggtc
gccacctctccccccagccacagccacatggaggatgagatcttcaaccagtccagtagc
acgcccacctccaccacctccagctcccccatcccgcccagcccagccaactgcaccacg
gagaactctgaagacgacaagaagaggggacggtccacggatagtgaagtcagccagtct
ccagccaaaaatggctccaagtctgtccacagcaaccagcacccccagtccccagctgtg
ccacctacctacccctctggccccccgcctgccactgctgccttgagtaccacccccggc
aacaatggggcctccagccctgcagcgccccccagtgctctgggccccaaggccagtccg
gctcccagccacagctcggggacccctgccccctatgcccaggctgtggctccgcccact
gccagtggccccaacactgcccagccccggccccccagcgcccagccaagtggggcaggt
ggtggaggtggtgccgggagtggaggcagcagcaacagtggcacaggtggaggctctggc
aagcagaatggcgccaccagttacagctcagtcgtggccgacagccctgcggaggtagcc
ctcagcagcagcgggggcaacagtgctagcagccaggccctggggccccctgcaggcccc
cacaatccacctcccagcacctccaaggagcccagtgcatcagcccctaccggggctggg
agcgtggccccaggctcagggaacaactctggaggacccagcctcctggtgccgctgccc
gtgaatgcccccagctcgccaacgcccagcttcagtgaggccaagacagcgggtgctctg
ctcaatggtcctccacagttcagcaccgccccggaggtcaaggcccccgaacctctgagt
tccctcaagtccatggcagaaagggcggccatcagttccggtatcgaggacccagtgccc
acattacacctgacggagcgagacatcatcctgagcagcacgtcagcgccgcccacctca
gcccagccacccctgcagctgtcagaagtgaacatcccactgtcgctgggtgtgtgcccg
ctggggcccgtgcccctcaccaaggagcagctataccagcaggccatggaggaggctgcc
tggcaccacatgccccacccctctgactccgagcgcatccggcagtacctcccccggaac
ccctgcccgacgcccccctaccaccaccagatgccacccccccactcggacacagtggag
ttctaccagcgcctgtcaaccgagacgctcttcttcatcttctactatctggagggaacc
aaggcacagtacctggcagccaaggccctaaagaagcagtcatggcggttccacactaag
tacatgatgtggttccagaggcacgaggagcccaagaccatcactgatgagtttgagcag
ggcacctacatctactttgactacgagaagtggggccagcggaagaaggaaggcttcact
ttcgagtaccgctacctggaggacagggacctccagtga
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