Perognathus longimembris pacificus (Pacific pocket mouse): 125339244
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Entry
125339244 CDS
T08928
Symbol
Lsm1
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm1
KO
K12620
U6 snRNA-associated Sm-like protein LSm1
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125339244 (Lsm1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
plop03019
]
125339244 (Lsm1)
Messenger RNA biogenesis [BR:
plop03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
125339244 (Lsm1)
mRNA degradation factors
5'-3' decay
Lsm complex
125339244 (Lsm1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
125339244
NCBI-ProteinID:
XP_048186250
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All DBs
Position
21:33595444..33642925
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AA seq
133 aa
AA seq
DB search
MNYMPGTASLIEDIDKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKKYGDIP
RGIFVVRGENVVLLGEIDLEKESDTPLQQVSIEEILEEQRVEQQSKLEAEKLKVQALKDR
GLSIPRADTLDEY
NT seq
402 nt
NT seq
+upstream
nt +downstream
nt
atgaactacatgcccggcaccgccagcctcatcgaggacatagacaaaaagcacttggtc
ctgcttcgagatggaaggacacttataggatttttaagaagcattgatcagtttgctaac
ttagtgctacatcagactgtggagcgtattcatgtgggcaaaaaatacggtgatattcct
cgagggatttttgtggtgagaggagaaaatgtggtcctactaggcgaaatagacttggaa
aaggagagtgacacacctctgcaacaagtgtctattgaagagatcctagaagaacaaagg
gtagaacagcaaagcaagttggaagccgagaagctgaaagttcaggctcttaaagatcgg
ggtctctccattcccagagcggacactcttgatgagtattaa
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