Perognathus longimembris pacificus (Pacific pocket mouse): 125339461
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Entry
125339461 CDS
T08928
Symbol
Fdft1
Name
(RefSeq) squalene synthase isoform X1
KO
K00801
farnesyl-diphosphate farnesyltransferase [EC:
2.5.1.21
]
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop00100
Steroid biosynthesis
plop01100
Metabolic pathways
Module
plop_M00101
Cholesterol biosynthesis, FPP => cholesterol
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09100 Metabolism
09103 Lipid metabolism
00100 Steroid biosynthesis
125339461 (Fdft1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
plop01006
]
125339461 (Fdft1)
Enzymes [BR:
plop01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.21 squalene synthase
125339461 (Fdft1)
Prenyltransferases [BR:
plop01006
]
Terpene biosynthesis
Squalene/phytoene synthase
125339461 (Fdft1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SQS_PSY
Octopine_DH
Motif
Other DBs
NCBI-GeneID:
125339461
NCBI-ProteinID:
XP_048186577
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All DBs
Position
21:complement(3791327..3806872)
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AA seq
457 aa
AA seq
DB search
MAAAVCSTKAMALLKRSWALSPGAPRRGRAWPPKDARGPRSPGRPRRPRRAASAPAAPAP
APAPTAPPPLCPQDSLSSGLKTCYKYLNQTSRSFSAVIQALDGELRHAVCIFYLVLRSLD
TLEDDMSVSVEKKVPLLQSFHTFLYQPDWRFMESKEKDRQVLEDFPTISLEFRNLAEKYQ
TVIAEACRKMGFGMAEFLTKDVTSKQDWDKYCHYVAGLVGIGLSKLFSASQFEDPLVGED
WECANSMGLFLQKTNIIRDYLEDQREGREFWPQEVWGRYVKKLGDFAKPENIDVAVHCLN
ELITNALQHIPDVITYLSRLRNQSVFNFCAIPQVMAIATLAACYNNQQVFKGVVKIRKGQ
AVTLMMDATNMPAVKAIIYQYIEEIHQRIPTSDPSSSETRHIISTIRTQNLPNCQLVSRS
HYSPIYLSFVMLLAALSWQYLSALSQVAEDYVPTGEH
NT seq
1374 nt
NT seq
+upstream
nt +downstream
nt
atggccgccgccgtgtgcagcaccaaggccatggccctgctgaagcgctcgtgggcgctg
agccccggcgccccccggcggggccgcgcctggcccccgaaggacgcgcggggcccgcgg
agcccgggccgcccccgccgcccccgccgcgcggcctcggcccccgccgccccggccccg
gccccggccccgaccgcgccgcctccgctctgcccgcaggactcgctcagcagcggcctg
aagacctgctacaagtacctgaaccagaccagccgcagcttctcggccgtcatccaggcg
ctggacggcgagctgcgccatgcggtgtgcatcttttacctggtcctccgctctctggac
acgctggaggatgacatgagcgtcagtgtggagaagaaggttcctctgctgcagagcttt
cacaccttcctttaccaaccagactggcgcttcatggagagcaaggagaaggaccggcaa
gtgctggaggacttccccacgatctccctggaatttagaaatctggctgagaaataccaa
acagtgattgctgaagcttgccggaaaatgggatttggcatggcagagtttttgactaag
gatgtgacctccaaacaggattgggataagtactgccactacgtcgccgggctggtggga
attggcctttccaagctgttttccgcctcccagtttgaagaccccttagttggtgaagat
tgggagtgcgcgaactcaatgggcctcttcctgcagaagacaaacatcatccgtgattac
ctagaagaccaaagggaagggagagagttttggcctcaagaggtctggggcaggtatgtc
aagaagctgggggatttcgccaagcccgagaacatcgacgtggccgtgcactgcctgaac
gagctcatcaccaacgccctgcagcacatccccgacgtcatcacctacctgtcgcggctc
cggaaccagagcgtgttcaacttctgtgccatcccacaggtcatggccattgccacgctg
gctgcctgttacaataaccagcaggtgttcaaaggggtcgtgaagatccggaaggggcaa
gccgttaccctaatgatggatgccaccaacatgccggccgtcaaagctatcatataccag
tacatagaagagatacatcaaagaatccccacctcggacccaagttctagtgaaacgaga
cacatcatctccacaatcaggacccagaacctccccaactgccagctggtgtcgcggagc
cactactcccccatctacctgtcgttcgtcatgcttctggcagccctgagctggcagtac
ctgagcgccctgtcccaggtcgcggaagactacgtgccgaccggcgagcactga
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