Perognathus longimembris pacificus (Pacific pocket mouse): 125339795
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Entry
125339795 CDS
T08928
Symbol
Ptch1
Name
(RefSeq) protein patched homolog 1 isoform X1
KO
K06225
patched 1
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop04024
cAMP signaling pathway
plop04340
Hedgehog signaling pathway
plop04360
Axon guidance
plop05200
Pathways in cancer
plop05205
Proteoglycans in cancer
plop05217
Basal cell carcinoma
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
125339795 (Ptch1)
04024 cAMP signaling pathway
125339795 (Ptch1)
09150 Organismal Systems
09158 Development and regeneration
04360 Axon guidance
125339795 (Ptch1)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
125339795 (Ptch1)
05205 Proteoglycans in cancer
125339795 (Ptch1)
09162 Cancer: specific types
05217 Basal cell carcinoma
125339795 (Ptch1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sterol-sensing
Patched
MENTAL
Motif
Other DBs
NCBI-GeneID:
125339795
NCBI-ProteinID:
XP_048187009
LinkDB
All DBs
Position
1:complement(82119138..82188958)
Genome browser
AA seq
1454 aa
AA seq
DB search
MASAGNAAEPQDRGGGGGGGGCSGALGRPAGGGRRRRTGGLRRAVLDRDYLHRPSYCDAA
FALEQISKGKATGRKAPLWLRAKFQRLLFKLGCYIQKNCGKFLVVGLLIFGAFAVGLKAA
NLETNVEELWVEVGGRVSRELNYTRQKIGEEAMFNPQLMIQTPKEEGANVLTTEALLQHL
DSALQASRVHVYMYNRQWKLEHLCYKSGELITETGYMDQIIEYLYPCLIITPLDCFWEGA
KLQSGTAYLLGKPPLRWTNFDPLEFLEELKKINYQVDSWEEMLNKAEVGHGYMDRPCLNP
ADPDCPATAPNKNSTRPLDMALVLNGGCHGLSKKYMHWQEELIVGGTVKNSTGHLVSAHA
LQTMFQLMTPKQMYEHFKGYDYVSHINWNENKAAAILEAWQRTYVEVVHQSVAQNSTQKV
LSFTTTTLDDILKSFSDVSVIRVASGYLLMLAYACLTMLRWDCSKSQGAVGLAGVLLVAL
SVAAGLGLCSLIGISFNAATTQVLPFLALGVGVDDVFLLAHAFSETGQNKRIPFEDRTGE
CLKRTGASVALTSISNVTAFFMAALIPIPALRAFSLQAAVVVVFNFAMVLLIFPAILSMD
LYRREDRRLDIFCCFTSPCVSRVIQVEPQAYTEPHSNTRYSPPPPYSSHSFAHETHITMQ
STVQLRTEYDPHTHVYYTTAEPRSEISVQPVTVTQDTLSCQSPESTSSTRDLLSQFSDSS
LHCLEPPCTKWTLSSFAEKHYAPFLLKPKAKVMVILLFLGLLGVSLYGTTRVRDGLDLTD
IVPRETREYDFIAAQFKYFSFYNMYIVTQKADYPNIQHLLYDLHKSFSNVKYVMLEENKQ
LPKMWLHYFRDWLQGLQDAFDSDWETGKIMPNNYKNGSDDGVLAYKLLVQTGSRDKPIDI
SQLTKQRLVDADGIINPSAFYIYLTAWVSNDPVAYAASQANIRPHRPEWVHDKADYMPET
RLRIPAAEPIEYAQFPFYLNGLRDTSDFVEAIEKVRTICNNYTSLGLSSYPNGYPFLFWE
QYISLRHWLLLAISVVLACTFLVCAVFLLNPWTAGIIVMVLALMTVELFGMMGLIGIKLS
AVPVVILIASVGIGVEFTVHVALAFLTAIGDKNRRAVLALEHMFAPVLDGAVSTLLGVLM
LAGSEFDFIVRYFFAVLAILTILGVLNGLVLLPVLLSFFGPYPEVSPANGLNRLPTPSPE
PPPSVVRFAVPPGHTNNGSDSSDSEYSSQTTVSGISEELQHYEAQQGMGGPAHQVIVEAT
ENPVFARSTVVHPEPRHHPPSNPRQQPHLDSGSLPPGRQGQQPRRDTSREGLRPPPYRPR
RDAFEISTEGHSGPSHRDRSGPRGARSHNPRNPASTAMGSSVPSYCQPITTVTASASVTV
AVHPPPISGPGPGRNPRGGGLCPGYEDYPETDPGLFEDPHVPFHVRCKRRDSKVEVIELQ
DVECEDGHWGDSSS
NT seq
4365 nt
NT seq
+upstream
nt +downstream
nt
atggcctcggctggtaacgccgccgagccccaggaccgcggcggcggcggcggcggcggc
ggctgcagcggggccctgggccggccggccggtggcgggaggcgcagacggaccggagga
ctgcgccgcgccgtactggaccgggactatctgcaccggcccagctactgcgacgccgcc
ttcgctctggagcagatttccaaggggaaggctactggccggaaagcgccactgtggctg
agagcgaagtttcagagactcttatttaaactgggttgttacattcaaaaaaactgcggc
aaattcttggttgtgggcctcctcatatttggagccttcgctgtgggattaaaggcagct
aatctcgagacgaacgtggaggagctgtgggtggaagttggtggacgagtaagtcgtgaa
ttaaattatactcgccagaagattggagaagaggctatgttcaatcctcaactcatgata
cagaccccaaaagaagaaggtgctaatgtcctgaccacagaagctctcctacaacatctg
gactcggcgctccaggccagccgggtccacgtatacatgtacaacaggcaatggaaattg
gaacatttgtgttacaaatcaggagaacttatcacagaaacaggttacatggatcagata
atagaatatctttacccttgtttaattattacgcctttggactgcttctgggaaggggca
aagctgcagtctgggacagcatacctcctaggtaaacctcctttgcggtggaccaacttt
gaccctttggaattcctagaagagttaaagaaaataaactatcaagtggacagttgggag
gaaatgctgaataaggctgaggttggccatgggtatatggaccgtccctgcctcaatcca
gccgatccagattgccctgccacagcccccaacaagaattcaaccagacctcttgatatg
gcccttgttttgaatggtgggtgtcatggattatcgaaaaagtatatgcactggcaggag
gagctgattgtgggtggtacagtcaagaacagcactggacatcttgtcagcgcccacgcc
ctgcagaccatgttccagttaatgactcccaagcaaatgtatgagcacttcaagggctac
gactatgtctcgcacatcaactggaacgagaacaaagcagcagccatcctggaggcttgg
cagaggacatatgttgaggtggttcatcaaagtgttgcccagaactccactcaaaaggtg
ctctccttcaccaccacaaccctggacgacattctaaaatccttctctgatgtcagcgtc
atccgagtggccagtggctacttactgatgcttgcctatgcctgtttaaccatgctgcgc
tgggactgctccaagtcccagggtgccgtggggctggctggcgtcctgttggttgcactg
tcagtggctgcaggattgggcctgtgctcattgatcgggatttcctttaacgctgcaaca
actcaggttttgccatttcttgctcttggtgttggcgtggatgatgtttttctcttggca
catgcatttagtgaaacaggacagaataaaaggatcccatttgaggacaggaccggggag
tgcctcaagcgcacaggagccagcgtggccctcacttccatcagcaatgtcactgccttc
ttcatggctgcattaatcccaatccctgctctgagagccttctccctccaggctgcagtg
gtggtggtgtttaattttgccatggtgctgctcattttccctgcaattctcagcatggat
ttgtatcgacgtgaggacaggagattggatattttctgctgctttacaagcccctgcgtc
agcagagtgattcaggttgagcctcaggcctacacggagcctcacagtaacacccgctac
agccccccaccgccctacagcagccacagcttcgcccatgaaacacacatcaccatgcag
tccactgtccagcttcgcacagagtatgaccctcacacccacgtgtattataccactgcc
gagccgcgatccgagatatcagtacagcccgtcactgtcacccaggacaccctcagctgc
cagagccccgagagtaccagctccaccagggacctgctgtcccagttctccgattccagc
ctccactgccttgagcccccctgcaccaagtggactctttcctcctttgcagagaagcac
tatgctccattcctcttgaaaccaaaagccaaggttatggtgatcctcctcttcctgggc
ttactaggagtcagcctctatgggaccactcgagtgagggatgggctggacctgacagac
attgtccctcgggaaacgagagaatatgactttattgctgcacagttcaaatacttttcc
ttctacaacatgtatatagtcacccaaaaagcagactaccctaatatccagcacttactt
tatgaccttcacaagagtttcagtaatgtgaagtatgtcatgttggaagaaaacaagcaa
cttcctaaaatgtggctgcactacttcagagactggctccaaggacttcaggatgcattt
gatagtgactgggaaactgggaaaatcatgccaaacaactacaaaaatggatcagatgat
ggagtcctggcttacaaactcctggtacaaactggcagccgagataagcccatcgatatc
agtcagttaactaaacagcgtctggtggacgcagatggcatcattaatcccagtgctttc
tacatctacctgacggcttgggtcagcaatgaccctgtggcctacgctgcctcccaggcc
aacatccggcctcatcgacctgagtgggtccatgacaaagctgactacatgccagaaaca
aggctgagaatccctgcagcagaaccaatcgaatatgctcagttccctttctacctcaac
ggcctgcgagacacttcagactttgtggaagccattgaaaaagtaagaaccatctgcaac
aactacacgagcctggggctctccagctaccccaacggctaccctttcctcttctgggag
cagtacatcagcctgcgccactggctgcttctggccatcagtgtggtgctggcctgcacg
tttctcgtgtgcgccgtcttcctgctgaacccctggacggctggaatcattgtgatggtc
ctggcattgatgacggttgagctctttggcatgatgggcctcattggaatcaagcttagc
gctgtgcctgtggtcatcctgattgcatcagttggcatcggagtggaatttaccgttcat
gtggctttggcctttctgacagccattggtgacaagaaccgcagagcagtgcttgccctg
gaacacatgtttgccccggtcctggatggtgctgtgtccactctgcttggagtactgatg
cttgcagggtctgagtttgatttcattgtcaggtatttctttgctgtcctggcgatccta
acaatcctgggtgttctcaatggactggttttgcttcctgtccttttatctttctttgga
ccatatcctgaggtgtctccagccaatggcctgaaccggctacctactccttcccctgag
ccacccccaagcgtggttcggtttgccgttcccccgggtcacacaaacaatggatctgat
tcttccgactcggagtacagttctcagacaacagtgtctggcatcagtgaggagcttcag
cactatgaggcacagcagggcatggggggccctgcccaccaagtgattgtggaagccaca
gaaaaccctgtctttgcccgttccactgtggtccatccggaaccaaggcatcacccaccc
tcaaaccctcgacagcaaccccacctggactcagggtcccttccgcccgggcgacaaggc
cagcagccccgcagggacacctccagagaaggcttgcggccacctccgtacagaccacgc
agagatgcgtttgaaatttctactgaagggcattctggccctagccacagggaccgctcg
ggcccccggggagcccgttctcacaaccctcggaacccagcatccacggccatgggcagc
tctgtgcccagctattgccagcccatcaccactgtgacagcttccgcttctgtgactgtt
gctgtacacccccctcccatctctgggcctgggccaggacggaaccctcgaggcgggggg
ctctgcccaggctatgaagactaccctgagactgaccctgggctgttcgaggacccccac
gtgccttttcacgtccgatgcaagagaagggactcaaaggtggaagtcatagagctacag
gatgtggagtgtgaggatgggcactggggagacagctctagctga
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integrated database retrieval system
