Perognathus longimembris pacificus (Pacific pocket mouse): 125339831
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Entry
125339831 CDS
T08928
Symbol
Ttc37
Name
(RefSeq) tetratricopeptide repeat protein 37
KO
K12600
superkiller protein 3
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125339831 (Ttc37)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
plop03019
]
125339831 (Ttc37)
Messenger RNA biogenesis [BR:
plop03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
125339831 (Ttc37)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_19
TPR_16
TPR_14
TPR_8
TPR_CcmH_CycH
TPR_17
TPR_12
TPR_11
ANAPC3
ARM_TT21_2nd
Sel1
TPR_9
ARM_TT21_5th
ARM_TT21_N
Fis1_TPR_C
TPR_15
TPR_30
ARM_TT21_C
TPR_5
Sey1_3HB
Suf
ChAPs
HrpB1_HrpK
TPR_6
BTAD
Motif
Other DBs
NCBI-GeneID:
125339831
NCBI-ProteinID:
XP_048187071
LinkDB
All DBs
Position
22:complement(24935982..25011585)
Genome browser
AA seq
1564 aa
AA seq
DB search
MSSKEVKTALKSARDAIRNKEYKEALKHCKTVLKQEKNNYNAWVFIGVAAAELEQPDQAQ
GAYKKAAELEPDQLLAWQGLASLYEKCNHINAKDDLPGVYQKLLDLYESVDKQKWCDVCR
KLVDLYYQEKKHLEVARAWHKLIKTRQEEGADNQELHQLWKKLTQLLADSTEDENNETQQ
LLLTAFENALVLSDTIPSEDHQVLYKHFIQCLSKFPHEAARLKKACEGMINIYPTVQYPL
EVVCLHLIESGNFTDEGHQYSCKLVEMNSKSGPGLIGLGIKALQDKKYDDAISNLTEGLK
ESPLCIAGWCRLAEVQVKMHRPKDAVLSCNKALSHLENISASGSGLHQKNLCLRLKAEAL
INLSDSESSEEAIHTLDQVSDANNIPELLVLKGLAYLNKGSLDEATKIMEDLLSSYPDLA
KAHALAALIHFTKKDYDQAEKFFQRALEKDAEVAEYHYHLGLTYWFMGEETRKDKSKALT
HFLKAARLDTYMGKVFCYLGHYYRDVVGDKTRARGCYRKAFELDDTDAESGAAAVDLSVE
LEDTETALAILTTVTQKASAGTAKWAWLRRGLYYLKAGQHCQAVADLQAALRADPKDFNC
WESLGEAYLSRGGYTTALKSFTKASELNPESIYSVCKVAAIQQILGKYKEAIAQYQLIIT
KKEDYVPALKGLGECHLMMAKAALVDYLDGKAVKYIEKALEYFTRALQHRADVSCLWKLV
GDACTSLHAVSSSKVNVNVLGILLGQKDGKQALRKNELLHLGGRCYSRALKLMSTSNTWC
DLGINYYHQAQHLTEIDSNTNDVKEFLEKSLHCLKKAVRLDSNNHLYWNALGVVACYSGV
ENYALAQHCFIKSIQSEQINAVAWTNLGVLYLVNENIEKAHEAFKMAQSLDPSYLMCWIG
QALIAETIGSYDTMDLFRHTTELSMHTEGAIGYAYWVCTTLQDKSNRDTELYQYNILQMN
AIPAAQVVLCKYVERIQNYAPAFTMLGYLNEHLQLKKEAAEAYQRAILLLQSGEDKETYN
TTVRNYGRLLCSIGEYDKAIQAFKSTPLEDLEDIIGFALALFMKGLYKESNKAYERALSV
VESEQDKAHILTALAITEYKQGKMDVAKSLLFKCSILKEPTTESLQTLCALGLAMQDATL
SKAALNELLKHVKHKSSDYQICLLTSAIYALQGRNVAVQRQASKAVHSNPADPALWTLLS
RVVAQYAQQNAKGGAIAGNVAHILDSNHGKKALLYTAVNQLAMGSSTGEDEKNIALKTIQ
KAAFLSPGDPAVWTGLMAACHADDKLALVNNTEPKRMELYLALFSAVSASITDKESFENY
NQCLEKWSLLQAVTGLMDTGRISEAESLCAKNLKNHPDQPAVILLLRQVQCKSLLESHKP
LPDAVLEELQKTVMSNSTSVPAWQWLAQVYQSQGMMSAAEMCYRKSLQVASQQGSWSGKL
SSLLKLALLALEVCMANISSDHWPSLVQEATTEALKLCFCPLAVLLQALLQFKLKMGARE
TRRLLERVVYQPGYPKSIVSTARWYLLRHLYAKNDYELIDVLVKNAEAHKDRRALELNQK
LSSQ
NT seq
4695 nt
NT seq
+upstream
nt +downstream
nt
atgtccagcaaagaggtaaagactgctttaaaaagtgcaagagatgcaatcagaaataaa
gaatataaagaagctttgaaacattgtaagactgtgttaaaacaagagaaaaataactat
aatgcctgggtttttattggtgttgctgcagctgagctagaacaacctgatcaggcccag
ggtgcttataagaaagctgctgaactagagccagaccaattactagcttggcaggggcta
gcaagcttgtatgaaaagtgtaaccacataaatgccaaggatgacttacctggtgtttac
caaaagctcctggatctttatgaaagtgttgacaaacagaagtggtgtgatgtctgtagg
aagcttgtggatctgtattaccaagaaaagaaacatctagaggtagctcgagcatggcac
aaattgataaagacaaggcaggaggaaggtgcagacaatcaagagcttcatcagctatgg
aaaaaattgactcagttgctggctgacagcacagaggatgagaataatgaaacccaacaa
ctgcttttaacagcatttgaaaatgcactggtcttatcagatacgatacctagtgaagat
caccaagtgctttataagcatttcattcagtgtttatccaaatttcctcacgaggctgct
aggttgaagaaggcctgtgaaggaatgataaacatctatcccaccgtacagtatccgtta
gaagtggtttgtttgcatttaattgaatcaggaaattttactgatgaaggacatcaatat
tcttgtaaactagtggaaatgaattcaaaaagtggcccaggcctcattggcttaggcatt
aaggcattacaagacaaaaagtatgatgatgctattagtaatttaacagaaggattaaag
gaaagccctctctgcatagctgggtggtgtcgtctggctgaagtccaggtcaaaatgcat
agacctaaggacgctgttctttcatgtaataaagccctgagtcacttagaaaatatcagt
gcatctggaagcggtcttcatcagaaaaatctttgtcttcgtttgaaagcagaggctttg
attaatctttcagattctgagtcttcagaggaagcaattcatacccttgatcaggtttct
gatgcaaataatattccagaacttttggttctcaaaggtttggcctatctgaacaaaggt
tcattagatgaagctacaaagattatggaagaccttctctcttcttaccctgacttagct
aaagctcatgctcttgcggctttgattcattttaccaaaaaggactacgaccaagcagaa
aagtttttccagagagcacttgagaaagatgctgaagttgctgagtatcactaccatctt
ggactaacctattggttcatgggtgaagagacaagaaaagataagtcaaaggctcttacc
cactttctgaaggctgcaagactggatacatacatgggcaaggttttctgctatttaggc
cattattatagagacgtagtgggtgacaaaaccagagcccgtggatgttatagaaaagct
tttgaattagatgacactgatgctgaatctggcgctgcagcagttgacttaagtgtggag
ctagaggatacggaaactgccttagctatcctaactacagtaactcagaaagcaagtgct
ggaacggcaaagtgggcctggcttagacgaggactatactatttgaaagctggtcaacat
tgtcaagcagtggctgacttacaggcagcattaagagcagacccaaaggacttcaactgt
tgggagtcattaggagaggcatacttaagcagaggtggttatacaactgctttgaagtcc
ttcacaaaagccagtgagctgaacccagagtccatatacagtgtgtgtaaggttgcagca
atacagcaaatcctaggcaagtataaggaggccatagcccagtaccagctgatcattaca
aagaaagaagattatgtgcctgccttgaaaggcttgggtgagtgtcatcttatgatggca
aaagcagctctagttgattatcttgatggaaaagctgtaaagtacatagaaaaagcgctg
gaatattttactcgggccctgcagcatcgtgctgacgtgtcctgcctttggaagctggtt
ggggatgcttgcactagcctgcatgcagtttcatcatctaaagtgaatgttaatgtttta
ggaattttacttggtcagaaagatggaaaacaagcattaaggaaaaatgagctcctccat
cttggaggaaggtgttacagtcgggcattaaaactgatgtctacatctaatacctggtgt
gatcttggaattaattattatcaccaagcacaacatctgacagaaatagacagcaacaca
aatgatgttaaagaatttctggagaagtctttacattgtctgaagaaggcagtgagactc
gacagtaacaatcacttatactggaatgctcttggtgtggttgcatgttacagcggtgtt
gaaaattatgcacttgctcagcactgtttcatcaaatccatccaatcagaacaaattaat
gctgttgcctggaccaacttgggagtgctgtatctcgtgaatgaaaacattgagaaagct
catgaagctttcaaaatggctcaatcccttgatccatcttatttaatgtgctggattgga
caagctcttattgcagaaactattggaagttatgacaccatggatctctttaggcacact
acagaactcagtatgcatactgagggagcaataggttatgcatattgggtctgcacaaca
ttgcaagataaaagcaacagagacacagagctgtatcagtacaacatcctccagatgaat
gctattccagcagcacaagttgttttgtgcaaatatgtggaaagaattcagaattatgct
ccagcttttacaatgttgggttacttaaatgaacatctacaactgaaaaaggaagctgca
gaagcatatcagagggcaattttgttgttacagagtggagaagataaagaaacttacaat
actacagtaagaaattatggaagattgttatgttccattggtgaatatgataaagctatc
caagcttttaagtcaacaccccttgaagacttagaagacatcataggttttgcattagct
ttgttcatgaaaggactatataaagagagcaataaagcctatgaaagagccctgtctgtt
gttgaatcagagcaagacaaagcccatatcttgacagctctggcaataacagaatataaa
caagggaaaatggatgtagcaaagtcactgctattcaaatgctctattttaaaggaacca
actacagaaagccttcaaaccctgtgtgccctagggctggcaatgcaggatgctacactg
tccaaagcagcacttaatgaattactgaagcatgtcaaacacaaaagtagtgattatcag
atatgccttcttacttcagcaatttatgcactccagggccgcaatgtagcagtgcaaaga
caagcatcaaaagctgtccacagtaacccagctgaccctgctctttggactttgttgtcc
cgagttgttgctcagtatgctcaacaaaatgcaaagggaggtgctatagcaggaaatgtg
gctcatattttggactcaaaccatggaaagaaggcattgttgtacactgcagtaaatcag
ttggcgatgggaagcagtacaggagaagatgaaaagaatattgcactgaagactattcag
aaagcagctttcctttctccaggtgaccctgctgtctggactgggctgatggcagcctgt
catgctgatgacaaactagctctagtcaacaatactgagccaaagaggatggagttatac
ttggcactgttctctgctgtttcagcttcaattacagacaaagaatcttttgaaaattac
aaccaatgtcttgaaaaatggtctcttttacaagctgtcactggtctcatggacacagga
agaatatctgaagctgaatcactatgtgcaaagaatttaaagaatcaccctgatcagcca
gctgttatcttacttttgagacaagttcagtgtaaatcacttctggagtcacataagcca
ctcccagatgcggtacttgaagaacttcagaaaacagtcatgtccaactcaacctctgtt
ccagcttggcaatggctggcacaggtctatcagtcccaaggaatgatgagtgctgcggag
atgtgttacagaaagagtctgcaagtagcatcccaacagggcagctggagtgggaagctc
tcgagtctgttgaagctagcactgcttgcattagaagtgtgcatggctaatatttctagt
gatcactggccatctctagttcaggaagctacaactgaggccttgaaactttgcttttgt
ccactggctgtccttctgcaagctttattacagttcaaactcaaaatgggggcaagagag
acacgacgacttttggagagagtggtgtatcagcctgggtatcccaaatctattgtctca
actgctcgttggtacctattgagacacctgtatgccaaaaacgactatgagctcattgat
gtgttggtaaagaatgctgaagctcataaagatagaagagcattggaactgaatcagaaa
ttatcctcccaatag
DBGET
integrated database retrieval system
