Perognathus longimembris pacificus (Pacific pocket mouse): 125339839
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Entry
125339839 CDS
T08928
Symbol
Pcdh12
Name
(RefSeq) protocadherin-12 isoform X1
KO
K16499
protocadherin delta 2
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
plop04515
]
125339839 (Pcdh12)
Cell adhesion molecules [BR:
plop04515
]
Cadherins
Protocadherins
125339839 (Pcdh12)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_3
Motif
Other DBs
NCBI-GeneID:
125339839
NCBI-ProteinID:
XP_048187084
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All DBs
Position
22:6331369..6344931
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AA seq
1161 aa
AA seq
DB search
MLLLQLLLGLLGSGAYLFLSGDCQEVSTLTVKYQVTEEVPPGTVIGRLSQELGRHERRRQ
TPGAAFQVLQLPKVLPVQVDAEGGLLSTGRRLDREQLCQQRDPCLVSFDVLATGDLALIH
VEIHVLDINDHQPRFPKSKQELEISESASLRTRIPLDRALDPDTGPNALHSYSLSPSDHF
ALDVIVGPDETKHAELLVVKELDREVHSFFDLVLTAYDNGNPPKSGTSLVKVNVLDSNDN
SPVFAESSLALEIQEDAAPGTLLLNLTATDPDQGPNGEVEFFFSKHVPPEVLRTFSVDAK
TGQVILRQPLDYEKNPAYEVDVQARDLGPNPIPAHCKVLIKVLDVNDNVPSVHITWASQP
SLVSEALPKDSFIALVSVDDLDSGSNGLVHCWLSEDLGHFRLKRTNGNIYMLLTNATLDR
EQWPEYTLTLLAQDQGAQPLSAKKQLTIQISDVNDNAPVFEKSRYEVSTQENNPPSLHLI
TIQARDADLGTNGKVSYRIQDSPVSHFIAIDSDTGEVTAQKSLDYEEMANFEFWVIAEDG
GQPRLASSISVWVSLLDANDNAPEVIQPTLSRGKATLSVLVNASTGHLLVPMESPAAAGP
GGAGTLSPAARSPQPFLLVTVVARDADSGANGKLLYHIHGGNEGHLFVLSPELGQLFINV
TNASSLVGSERELEIVVKDQGSPPLQTRALLRVLFVTSADHLRDAAHEPGVLSTSVLTVI
CLAVLLAIFGLPLALFMFICRTEKKDNRAYNCREAESTYCHQPKRPQKHIQKADIHLVPV
LREQVNEAEQVGQCHRAAGKEAMTEAGWDPCLQAPFHLTPTLYRTLRNQGNQGAQAESQE
VLPDTVNLLFNHPRQRNASRENLSLPESPPALGQPRARPPKVPGSPAGRRAGDQSFQGAS
LSPPASSATLRRQRNLHGPASPEQESGPHQILRSLVRLSVAAFAERNPVEELAVDSPPVQ
QISQLLSLLHQGQFQPRPNHRGNKYPAKPACRSAVPDADGAGAKPGGQVEPDQEEGPLDP
EEDLSVKRLLEEELSSLLDPHTGLALERLSAPDPAWMARLSLPLTTNYRDNLCPPDAEAA
EEPRTFQTFGKGPGPELSAAGTRLASTFLSEMSSLLELLRAQRPGAAVPVEAASEALRRL
SACGRTLSLDLATGGGPPGDP
NT seq
3486 nt
NT seq
+upstream
nt +downstream
nt
atgttacttctgcaacttctgctggggctcttggggtcaggtgcgtacttgttcctctca
ggggattgtcaggaggtgagcactctcacggtgaagtaccaagtgacagaggaagtgcca
cctggcacggtgatagggagactgtcccaggagctgggccggcatgagaggcgtaggcag
acccctggggctgccttccaggtactgcagctgcctaaggtgctccccgttcaggtggac
gcggaggggggcctgctcagcaccgggcggcggctggatcgggagcagctgtgccagcag
cgagatccctgcctggtgtcctttgacgtgcttgccacgggggatctggctctcatccac
gtggaaatccacgtgctggatatcaatgaccatcagccgcggtttcccaaaagcaaacag
gagctagaaatctctgagagtgcttccctgcgcacgcggatacccctggacagagctctt
gacccagacactggcccaaatgccctccactcctattccctgtctcccagcgatcacttt
gcccttgatgtcattgtgggcccggatgagacaaagcatgcagaactgttggtggtgaag
gagctggaccgggaggtccactcattctttgacctggtgttgactgcctatgacaatgga
aaccctcccaagtcaggtaccagcttggtcaaggtcaatgtcctcgattccaatgacaac
agtcctgtctttgctgagagttccttggcactagaaatccaggaagatgctgcccctggt
accctcctcctaaacctaacagccacggaccctgaccaaggccccaatggagaagtggag
ttcttcttcagcaagcatgtgcccccagaggtgctacgtaccttcagtgtagatgccaag
actggccaggtcattctgcgccaacccttagactatgagaagaaccctgcctatgaggta
gacgtccaggccagggacctgggtcccaatcccatccccgcccactgcaaagtcctaatc
aaagtgctggacgtcaatgacaatgtcccaagcgtccacatcacatgggcctcccagccg
tcgctggtgtcggaagctcttcccaaggacagcttcattgcgctcgtctcggtggatgac
ttagactcaggaagcaacggtctggtccattgttggctgagtgaggatttgggccacttc
cggctgaaaaggactaatggcaacatctacatgctgctaaccaatgccaccctagacagg
gagcagtggcccgaatataccctcaccttgctagcccaagaccaaggtgcccagcccctg
tcagccaagaaacagctcaccatccagatcagcgatgtcaacgacaacgcacctgtgttt
gaaaagagccggtatgaggtctccacccaggaaaacaatccgccctctctccacctcatc
accatccaggctcgtgacgcagacttgggcaccaatgggaaagtgtcctaccgcatccag
gactctccagtgtctcacttcatcgcgatcgactctgacacgggagaggtcacggcgcag
aagtcactggactatgaagaaatggccaactttgagttctgggtcatagccgaggatggg
gggcagccccggcttgcctccagcatctccgtgtgggtcagcctcttggatgccaatgat
aacgcccccgaggtgattcagcccacgctcagccgcgggaaggccaccctctctgtgctt
gtgaatgcctccaccggtcacctcctggtgcccatggagagtcccgctgctgcgggccca
ggaggggctgggacactatcaccggccgcacgcagccctcagcccttccttttggtgacg
gtggttgcaagagatgcagactcgggagcaaacgggaagctcctgtaccacattcacggc
gggaacgaaggccatctctttgtcctcagccctgagctgggacagctgttcatcaatgtc
accaacgccagcagcctcgttgggagtgagagggagctggagatcgttgtgaaggaccag
ggaagcccccccttgcagactcgagccttgttacgcgtcctgttcgtcaccagtgcggac
cacctgagagacgccgcccatgagcctggggtcctgagcacatccgtgctgaccgtgatt
tgcctggcggtcctgctggccatctttgggttgcccttagctctcttcatgttcatctgc
cggacggagaagaaagacaacagggcctacaactgtcgggaagcggagtccacctactgc
caccagcccaagaggccccagaaacacattcagaaggcggatatccatctggtgcctgtg
ctcagggagcaggtgaatgaggctgagcaagttgggcagtgccacagagccgcaggcaag
gaagcgatgacggaagccggctgggatccctgcctgcaggcgcccttccacctcacacct
accctgtacaggaccctgcgtaaccaaggcaaccagggagcacaggccgagagccaagag
gtgctgccggacaccgtcaacctcctcttcaatcatcccaggcagaggaacgcctcccgg
gagaacctgagcctccccgagtccccacctgccctaggccagccccgcgcgaggcccccc
aaggttcctggcagccccgcggggaggcgggccggagaccagagcttccagggggcctcc
ctgagcccgccagcgtcttccgcaaccctgaggcggcaacggaatctccatggcccagcg
tcccctgagcaagaatccggcccccaccagatcctgaggagcctggtccgactgtcggtg
gctgccttcgcggagcgaaaccctgtggaggagctcgccgtggattctccacctgttcag
caaatctcccagctgctgtccttgctgcatcagggccaattccagcccagaccgaaccac
cggggaaataagtacccggccaagccagcctgcaggagtgccgtccctgacgcggacggg
gcaggtgccaagcctggcggccaggtggaaccagaccaggaggaagggcccttagacccg
gaagaagacctctctgtgaagcggttgctagaagaggagctgtccagcctgctggaccca
cacacaggcctggccctggagaggctgagcgccccggacccggcctggatggccaggctg
tccttgcccctcaccaccaactaccgggataacctgtgccccccggacgccgaggccgcg
gaggagccgcgcaccttccagacgttcggcaagggtcccgggccggagctgagcgcggcg
ggcacgcggctggccagcaccttcctgtcggagatgagctcgctgctggagctgctgcgg
gcgcagcgcccgggcgcggccgtgcccgtggaggcagcctccgaggccctgcgcaggctc
tccgcctgcggccgcaccctcagcctcgacctggccaccggcgggggcccgcccggggac
ccctga
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