Perognathus longimembris pacificus (Pacific pocket mouse): 125339870
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Entry
125339870 CDS
T08928
Name
(RefSeq) protocadherin beta-16-like
KO
K16494
protocadherin beta
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop04519
Cadherin signaling
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04519 Cadherin signaling
125339870
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
plop04515
]
125339870
Cell adhesion molecules [BR:
plop04515
]
Cadherins
Protocadherins
125339870
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Ig_CLSTN
Cadherin_FAT4_N
Cadherin_CELSR2_9th
Cadherin_C_2
VWA_3_C
FctA
Motif
Other DBs
NCBI-GeneID:
125339870
NCBI-ProteinID:
XP_048187140
LinkDB
All DBs
Position
22:complement(7215398..7218109)
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AA seq
798 aa
AA seq
DB search
MENGWIPNQRQRQVLIFFVSLSLSGVGTELGPYSVVEETERGSFVANLGKDLGLELSQLS
TRGARIISQGNKEHLQLKVQTGDLLINEKVDREELCGPTEPCLLHFQVLMAKPLEIVQGE
LRVRDINDNSPVFTEREMVFKIPENSPLGYSFPLNNALDLDVGNNSVQKYAVSPNSHFRV
LTRNRSDGRKYPELVLEKELDREQEPELRLTLTALDGGSPPRTGTSQVRIEVGDINDNAP
EFQQPVYTVQVPENSPVGSLVATVSARDLDSGDNGRILYTLSKSSEETSNLLEVNPMTGE
IRLRNRVDFETVRSHEVDIEATDGGGLSGKCNLILQVVDINDNRPQVTVSALTDLVPENS
ADVVVAVLSVSDRDSGDNGKVVASIEEDLPFLLKASGKNFYTLVTERPLDREEREEYNIT
ITVTDAGSPRLRTQHTLAVRVADENDNAPEFTQACYTLRVRENNSPALALGSVRATDRDA
GSNAQLSYSLLAGPQPGPDAAALVSIDADSGQLFALRPLDYEALPAFELRVRAADRGAPP
RSSQARVRVQVLDANDHAPRVLYPPQNASAPCTELLPRAAEPGYLVSKVVAVDRDSGQNA
WLSFRLLQATEPGLWGVAPHNGEVRTARPLSERDAPRHRLLLLVQDHGEPPRSASVALHV
LLVDGFSQAHLPPPAAPPERAQPDRLAASLLVALAALAALGLAALLLFVAGRLCRRRGAR
SRGGCALPDPPFPARLLDAGPAGTLARGGRHLGALRGATGATEVNSLKPIFPNLSPQIPG
NEIEGAPSFRNSLGFSIQ
NT seq
2397 nt
NT seq
+upstream
nt +downstream
nt
atggagaatggatggatcccaaatcagaggcaaaggcaagtcctgattttctttgtttcc
ctgagcctgtctggggtgggcacggagctggggccgtattccgtggtggaagaaacggag
agaggctccttcgtagccaatctagggaaagacctggggttggaattgtcacagttgtcc
acccgtggggccagaataatttcccagggaaacaaggagcatttgcagctcaaggtacaa
actggagatttgctcatcaatgagaaagtagatcgcgaggagctgtgcggtcccacggag
ccttgcctattacatttccaagtgctgatggcaaagcccttggagatagttcagggtgaa
ctgagagtgagagacataaatgacaattctcctgtgtttactgaaagagagatggttttt
aaaataccagaaaatagtccactaggatattcatttcctctaaataatgctctggacttg
gacgtaggaaacaatagtgtccagaagtatgcagtcagcccaaactcccatttccgtgtt
ctaacccgtaatcgcagcgatggtaggaaataccccgagctggtgctggagaaagagctg
gaccgggagcaggagcctgaactaagattaaccctgacagcactggacggcggctcccca
cctcggactgggacctcacaggtccgcattgaagtgggagacatcaacgacaacgcccct
gaatttcagcagcctgtctacacggtgcaagtccccgagaatagtccggtaggctccttg
gtggccacggtctccgccagggacttagacagtggagacaatgggagaatactgtacacg
ctttctaagtcttcggaagaaacgagcaatctgttagaagtcaatccgatgaccggggaa
atccggctgaggaaccgggtagactttgaaacggtgaggtctcatgaagtggacatcgag
gccacggatggaggtggtctgtcagggaaatgcaacctcatcctacaggtggtggacatc
aatgacaaccggccgcaggtgaccgtgtccgcgctcacagacctggtccccgagaactcc
gcggatgtggtggttgcagtgctcagtgtttccgatcgtgactctggagacaacgggaag
gtggtggcttccatcgaggaagatcttccctttcttctgaaagcttcagggaagaacttc
tacaccctggtgacggagcggccgctggaccgggaggagagagaggagtacaacatcacc
atcaccgtgacggacgcggggagcccccggctgcgcacgcagcacacgctcgccgtgcgc
gtggccgacgagaacgacaacgccccggagttcacgcaggcctgctacacgctgcgcgtg
cgcgagaacaacagccccgccctggccctgggcagcgtgcgcgccaccgacagggacgcg
ggcagcaacgcgcagctgagctactcgctgctggccgggccgcagcccgggcccgacgcg
gcggcgctcgtgtccatcgacgccgacagcgggcagctgttcgccctgaggccgctggac
tacgaggccctgccggcgttcgagctgcgcgtgcgcgccgccgaccgaggcgcgcccccg
cgcagcagccaggcgcgggtgcgcgtgcaggtgctggacgccaacgaccacgcgccccgg
gtgctgtacccgccgcagaacgcgtctgcgccctgcaccgagctgctgcccagggcggcc
gagccgggctacctggtgagcaaggtggtggcggtggaccgcgactcgggccagaacgcc
tggctgtcgttccggctgctgcaggccacggagcccgggctgtggggcgtggcgccgcac
aatggcgaggtgcgcaccgcgcggccgctgagcgagcgcgacgcgccccgccaccggctg
ctgctgctggtgcaggaccatggcgagccgccgcgctcggccagcgtggcgctgcacgtg
ctgctggtcgacggcttctcgcaggcccacctgccgccgcccgccgcgccgcccgagcgc
gcgcagcccgaccgcctggccgcctcgctgctcgtcgcgctggccgccctggccgccctg
ggcctcgcggcgctgctgctcttcgtggccggcaggctgtgccggaggcgcggggcgcgc
tcgcggggcggctgcgcgctgcccgaccccccgtttcctgcgcgcctgctggacgcgggg
cccgcggggacgctggcgcgcggcggccgccacctgggggcgctgcggggcgcgaccggc
gccaccgaggtcaactcgctgaagccaatctttccaaacctgtctccccagattcctggg
aacgagatagagggagcgccgagcttccgcaatagtttggggttcagtattcagtaa
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