Perognathus longimembris pacificus (Pacific pocket mouse): 125340015
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Entry
125340015 CDS
T08928
Symbol
Synpo
Name
(RefSeq) LOW QUALITY PROTEIN: synaptopodin
KO
K21112
synaptopodin
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
125340015 (Synpo)
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Gene cluster
GFIT
Motif
Pfam:
Calsarcin
Motif
Other DBs
NCBI-GeneID:
125340015
NCBI-ProteinID:
XP_048187350
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Position
22:complement(809121..853481)
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AA seq
881 aa
AA seq
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MLGPHFPPPPLRPSGGKPALCTFQIPDGSYRCLALEAEESSGEEGLQGEAGGGLVDLEDD
EVARRSQDNAACGTVQGEPPLPRALITQPPGCSWFQHDGRTGQDWDGVKAQQGMTTSLSP
GPGPGEARKPALSRSSSVAEQDLKEAKARSQQIAAQLTTPPGPHSRGVRLFHRRRQRVNE
FTLESRGQRGPPPGRPGDAPAPGLSPARPSTTQGPARRPGMEGYAGEDGPLRHLEKVASE
EEEVPLVVYLKENAALLTANGLHLSQSREAPPAGAHEPEPALDINQNLTDGAPAADANQN
PAARGLPQSPSRPHTPEAQRPRPGSAAPDAGNAGDASSRPPDADGPAPAPGDEVRAGVLL
VDQASAPPAPAGALSREASAVPGGAPAPDFAPSSPLADAHPSAEPEPSGRPAAAPRMSSE
VHLTLARPQAVVNRTARPFGVQAPAGGGLGERSPRVERRHLGEKAPAXPPALAERSPGPQ
RRAPPPSPAVERRPLGSFTPPPTYAETLSAAPPASRGRSPPAYSALYPGSDPRPGAPRGP
AAPASKTGILEESLARRGSRKSMFTFVEKPKVTPNPDLLDLVQTADEKRRQREQGEAGAD
EEPFALGAEASNFQPEPARGRAAPAEEPVPEWASCLKSPRIQAKPKPRPNQNLAEASGKG
AELYARRQSRMEKYVIESSPGHHELARCPSPTMSLPSSWKYSTSAPGGFRVASLSPARTP
PASLYHGYLPENGVLRPEPTRQPPYSLRPSLFALSPVKEPAQAAASPRSASARAAPARAA
SPRAASPAKPGSLDLVPSLPRAGLPPSPALPRPSRASPGLYASPGQDGLQPAASPTYSSD
VSPVSPSRAWSPRAKQAPRPSFSTRNAGIEAQVWKPSFCFK
NT seq
2646 nt
NT seq
+upstream
nt +downstream
nt
atgctgggccctcacttccctcccccacccctccggcccagcggggggaagcctgccctc
tgcaccttccagatccccgacggcagctacaggtgtctggctctggaggccgaggagagc
agcggtgaggaaggcctgcagggcgaggccggagggggcctcgtggatctggaggacgac
gaagtggcccgaagaagccaggacaacgctgcctgcggaaccgtccaaggggagccaccg
ctgcccagggctctgatcacccagccccccggctgctcctggttccaacacgatggcagg
accggccaggactgggatggggtgaaggcccagcaggggatgaccaccagcctcagccct
ggccctggccccggggaggcccggaaaccagcgctgagccgcagcagcagcgtcgccgag
caggatctgaaggaggccaaggcccgcagccagcagatcgccgcccagctgaccaccccg
cccggcccccactcccgcggggtgcggctcttccacaggcgcaggcagagggtgaacgag
ttcaccttggagagccgaggccagcggggcccgccgcccggccgcccgggtgatgctcca
gcgccgggcctgagtcccgcccgcccctcgacgacgcagggccccgcgcggcgccccggc
atggagggctacgcgggggaggacggcccgctgcggcacctggagaaggtggccagcgag
gaggaggaggtgccgctggtggtctacctcaaggagaacgccgccctgctgacggccaac
gggctgcacctgtcccagagccgcgaggccccgccggccggggcgcacgagccggaaccg
gccctggacatcaaccagaacctgaccgacggcgccccggccgccgacgccaaccagaac
cccgcggcccgcggcctcccgcagagcccgagccggccgcacacccccgaggcgcagcgc
ccgcggcccggctccgcggcgcccgacgccggcaacgccggcgacgccagctcccgcccg
cccgacgccgacgggccggcccccgcccccggggacgaggtgcgggccggcgtcctcctc
gtcgaccaggcgtccgcgccccccgcgcccgccggcgccctctccagggaggcctcggcc
gtgcccggcggcgcgcccgccccggacttcgcgcccagctcgccgctcgccgatgcgcac
ccgtcggcggaaccggagccgtcggggcggcccgccgccgcccccaggatgtccagcgag
gtccacctcacgctggccaggccccaggctgtggtcaacaggacggccaggcccttcggc
gtccaggcgccggcgggcggcggcctcggggagcggagcccccgggtggagaggcggcac
ctgggagagaaggcccccgccnngccccccgccctggccgagcgcagccccgggccgcag
cgccgcgcgccgccgcccagccccgcggtggagcggcgcccgctggggagcttcaccccg
ccgcccacctacgccgagaccctctccgcggcccccccggcctcccggggccgctcgccg
cccgcgtactcggcgctgtaccccggctccgaccccaggcccggcgccccgaggggcccc
gcggcgcccgccagcaagacgggcatcctggaggagtccctggcccgcaggggcagccgc
aagtccatgttcaccttcgtggagaagcccaaggtgaccccgaacccggacctgctggac
ctggtgcagacggccgacgagaagcgccggcagcgggagcagggcgaggcgggcgccgac
gaggagcccttcgccctgggcgccgaggcctccaacttccagccggagcccgcgcggggc
cgggccgcgcccgccgaggagcccgtgcccgagtgggcctcgtgcctcaagtcgccccgc
atccaggccaagcccaagccccggcccaaccagaacctggccgaggcgtcgggcaagggg
gccgagctgtacgcgcgccgccagtcgcgcatggagaagtatgtcatcgagtcctccccg
gggcaccacgagctggcccgctgcccgtcccccaccatgtcgctgccctcctcctggaag
tactccaccagcgcccccgggggcttccgcgtggcctccctgagccccgcgcgcaccccg
ccggcctcgctctaccacggctacctgcccgagaacggcgtcctgcgcccggagcccacc
aggcagcccccctactccctgcggccctcgctcttcgccctctcgcccgtcaaggagccc
gcccaggccgccgcctcgccgcgctccgcctccgcccgagccgccccggcgcgcgcggcc
tccccgcgcgccgcctccccggccaagcccggctccctggacctggtgcccagcctgccc
cgggcgggcctcccgccgtcgccggccctgccccggccctcccgcgcctccccgggcctc
tacgcctcccccggtcaggacggcctccagcccgccgccagccccacctacagcagcgac
gtctccccggtgtccccctccagggcctggtccccccgcgccaagcaggcccccaggccc
tccttctccacccggaacgcggggatcgaggcgcaggtgtggaagccttccttctgcttc
aagtaa
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