Perognathus longimembris pacificus (Pacific pocket mouse): 125340045
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Entry
125340045 CDS
T08928
Name
(RefSeq) protocadherin alpha-9 isoform X1
KO
K16493
protocadherin alpha
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
plop03036
]
125340045
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
plop04515
]
125340045
Chromosome and associated proteins [BR:
plop03036
]
Eukaryotic type
Centrosome formation proteins
Other centrosome associated proteins
125340045
Cell adhesion molecules [BR:
plop04515
]
Cadherins
Protocadherins
125340045
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
Cadherin_tail
Cadherin_2
Cadherin_FAT4_N
Ig_Cad99C_N
Ig_CLSTN
Cadherin_CELSR2_9th
Ig_BT4661_3rd
DUF4307
Motif
Other DBs
NCBI-GeneID:
125340045
NCBI-ProteinID:
XP_048187403
LinkDB
All DBs
Position
22:complement(7306860..7443266)
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AA seq
982 aa
AA seq
DB search
MNNGEPRRVELTEEDDPSAFRSNRHQVEEALALEMLSSGGAKLQSGNLLLSLLLFTIWRA
GSVQLRYAVPEEAQHGTFVGRLAQDLGLELRELVPRLFQLDTKGHGELLEVNVQNGILFV
NARVDREELCGRSAECSLHLEVIVDRPLRVFHVEVEVEDINDNAPVFPAAHKTLFVPESR
LPDTRIPLEGASDADTGANARLTYALSPSEHFSLDVPPSHGQVQPLGLVLRKPLDREEAP
ELRLWLTATDGGKPELTGTVQLLITVLDANDNAPVFDRTLYAVTLPENVPVGTTVVQLNA
SDADEGAHGEVVYSFSSDVPADTRATFRIDAVSGEITVTGRVDFEERKVYKIQVEASDRG
SPPLVGHCTVLVEVEDMNDNAPQLTVRPLRLPINEDAPLDTVIALVSVTDPDAGANGQVS
CSLTPRVPFRLVSTFNNHYSLVLDSALDREATAGYQVVVTARDGGSPPRWATASVWVEVA
DVNDNAPVFAQAEYTVSVRENNAPGAHICTVSARDADAQENARVSYALVERRVGERALSS
LVSVHAQSGRVHALQPLDHEELALLQFQVSARDAGAPARGSNASLQLFVLDENDNAPALL
GPAGGGARSHALARSAGAGHVLTKVRALDADSGYNAWLAYELQPAAAGARSPFRVGLYTG
EISTTRALDEADAPRQRLVVLVRDHGEPALTATATLLVSLVDGAPSPKLSARASAGRVGA
EASPLDVNASLMVAICAVSGLLVLTLLLWGALRCCGAARSEGACAPGKPVLVCSSAVGSW
SSCRQRRPGLCSADGPPKADLMAFSPGLTPCPASAEGVGEPPTFVDSSEKPRQPNPDWRY
SASLRAGMHSSVHLEEAGILRAGPGGPDQQWPTVSSATPEPEAGEVSPPVGAGVNSNSWT
FKYGPGNPKQSGPGELPDKFIIPGSPAIISIRQEPSNSQIDKSDFITFGKKEETKKKKKK
KKGNKAQEKKEKGNSTTDNSDQ
NT seq
2949 nt
NT seq
+upstream
nt +downstream
nt
atgaacaatggcgagcctaggagagtggagctgacagaagaagacgatccctctgcattt
cgaagtaacagacaccaggtagaagaagctcttgctcttgaaatgctgtcctcaggcgga
gccaagctgcagagcgggaatctcctgttatcacttctgctcttcacaatatggagagct
gggagcgttcagctccgttacgcggtccccgaggaggcccagcacggcacgttcgtgggc
cgcctcgcgcaggacctggggctggagctgcgggagctggtgccgcgcctgttccagttg
gataccaagggccacggggagctgctggaggtgaacgtgcagaatggcattttgtttgtg
aacgcgcgggtggaccgggaggagctgtgcgggcggagcgcggagtgcagcctccacctg
gaggtgatcgtggacaggccgctgcgggtgttccacgtggaggtggaggtggaggacatc
aacgacaacgcgcccgtgttccctgccgcacacaagactctgtttgttccagaatccagg
ctgccagacacgcggataccgctagagggcgcgtcggacgcggacaccggagccaatgcg
cggctgacttacgcgctgagccccagcgagcacttctccctggacgtcccgcccagccac
gggcaggtccagccgctcgggctggtgctgcgcaaacccctcgacagggaggaagccccc
gagctccgcttatggctcacggccacggacggaggcaagcccgagctgacgggcaccgtg
cagctgctcatcaccgtgctggacgccaacgacaacgccccggtgttcgaccggacgctg
tacgcggtgaccctgccggaaaacgttcccgtcgggaccacagtcgtgcagctcaacgcc
tccgatgcggacgaaggcgcgcacggggaggtggtgtactccttctccagcgacgtgcct
gcagacacgagggccacgttccgcatcgacgcggtgagcggggaaatcacagtgacgggc
cgtgtggattttgaagaaaggaaagtgtacaaaatccaagtcgaggcgtcggatcggggc
tccccgcctctggtcggtcactgcaccgtgctggtggaagtggaggacatgaacgacaac
gccccgcagctgacggtcagaccgctccggctccccattaacgaagacgcccccctggac
acggtgatcgccctggtcagcgtgactgatccagacgcgggagccaacggacaagtgtcc
tgttccctgactccccgggtgcccttcaggctggtgtccacgttcaacaatcactactcc
ctggtgctggacagcgccctggaccgcgaggccaccgcgggctaccaggtggtggtgacg
gcgcgggacgggggctcgcccccgcggtgggccacggccagcgtgtgggtggaggtggcc
gacgtgaacgacaacgcgcccgtgttcgcgcaggccgagtacacggtgtcggtgcgcgag
aacaacgcgcccggcgcgcacatctgcacggtgagcgcgcgggacgcggacgcgcaggag
aacgcgcgcgtgtcctacgcgctggtggagcggcgcgtgggcgagcgcgcgctgtcgagc
ctcgtgtcggtgcacgcgcagagcggccgcgtgcacgcgctgcagccgctggaccacgag
gagctggcgctgctgcagttccaggtgagcgcgcgcgacgccggcgcgcctgcgcggggc
agcaacgccagcctgcagctgttcgtgctggacgagaacgacaacgcgccggcgctgctg
gggccggccgggggcggggcgcggagccacgcgctggcgcgctcggcgggcgcgggccac
gtgctgaccaaggtgcgcgcgctggacgcggactcgggctacaacgcgtggctggcgtac
gagctgcagccggcggcggccggggcgcgcagcccgttccgcgtggggctgtacacgggc
gagatcagcaccacgcgcgccctggacgaggcggacgcgccgaggcagcgcctggtggtg
ctggtgcgggaccacggcgagcccgcgctcacggccacggccacgctgctggtgtcgctg
gtggacggcgctccgtcgccgaagctgtctgcgcgcgcgtcggcgggccgcgtgggcgcg
gaggcgtcgccgctggacgtgaacgcgtcgctgatggtggccatctgcgcggtgtccggc
ctgctggtgctgacgctgctgctgtggggggcgctgcggtgctgcggggcggcgcggagc
gagggcgcgtgcgcgccggggaagccggtgctggtgtgctccagcgcggtggggagctgg
tcctcgtgccggcagaggaggcccgggctgtgctccgccgacggcccgcccaaggccgac
ctcatggccttcagcccgggtctgactccttgtcctgcgtctgcagagggagtcggagag
ccacccacgtttgtggactcttctgagaagccacgacagcccaatcctgactggcgttat
tctgcttccctgagagcgggcatgcatagctctgtacacctggaggaggctggcatttta
cgggctggtccaggaggaccagatcagcagtggccaaccgtgtccagtgcaacaccagaa
ccagaagcaggagaagtgtccccacccgttggcgccggtgtcaacagcaacagctggacc
tttaaatatggaccaggcaatcccaaacagtccggtcccggtgagttgccagacaaattc
attatcccaggatctcctgcaatcatctccatcaggcaggagccttctaacagccaaatt
gacaaaagtgacttcataaccttcggcaaaaaggaggagaccaagaaaaagaagaaaaag
aagaagggtaacaaggcccaggagaaaaaagagaaagggaacagcacgactgacaacagt
gaccagtga
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