Perognathus longimembris pacificus (Pacific pocket mouse): 125340127
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Entry
125340127 CDS
T08928
Symbol
Chd1
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 1
KO
K11367
chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
plop03021
]
125340127 (Chd1)
03036 Chromosome and associated proteins [BR:
plop03036
]
125340127 (Chd1)
Transcription machinery [BR:
plop03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
125340127 (Chd1)
Chromosome and associated proteins [BR:
plop03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
SAGA complex
125340127 (Chd1)
SLIK complex
125340127 (Chd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_Hrp3
CDH1_2_SANT_HL1
CHD1-like_C
Chromo
Helicase_C
ResIII
HDA2-3
DEAD
Motif
Other DBs
NCBI-GeneID:
125340127
NCBI-ProteinID:
XP_048187537
LinkDB
All DBs
Position
22:complement(27381745..27459456)
Genome browser
AA seq
1713 aa
AA seq
DB search
MNGQSDEESVRNSSGESSQSDDDSGSASGSGSGSSSGSSSDGSSSQSGSSDSDSGSDSGS
QSESESDTSRENKVQAKPPKVDGAEFWKSSPSILAVQRSAMLKKQQQQQQQQQHPASSNS
GSEEDSSSSEDSDDSSSAVKRKKHKDEDWQMSGSGSPSQSGSDTESEEERDKSSCDETES
DYEPKNKVKSRKPPSRSKSKNGKKLLGQKKRQIDSSEDDDDDEEDYDNDKRSSRRQATVN
VSYKEDEEMKTDSDDLLEVCGEDVPQPEEEEFETIERFMDCRIGRKGATGATTTIYAVEA
DGDPNAGFDKNKEAGDVQYLIKWKGWSHIHNTWETEETLKQQNVRGMKKLDNYKKKDQET
VRWLKNASPEDVEYYNCQQELTDDLHKQYQIVERIIAHSNQKSAAGYPDYYCKWQGLPYS
ECSWEDGALISKKFQACIDEYFSRNQSKTTPFKDCKVLKQRPRFVALKKQPCYIGGHEGL
ELRDYQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPL
STLTSWQREIQTWASQMNAVVYLGDINSRNMIRTHEWMHPQTKRLKFNILLTTYEILLKD
KAFLGGLNWAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHF
IMPEKFSSWEDFEEEHGKGREYGYASLHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMS
ALQKQYYKWILTRNYKALSKGSKGSTSGFLNIMMELKKCCNHCYLIKPPDNNEFYNKQEA
LQHLIRSSGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIK
GELRKQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAH
RIGQKKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQRMDTTGKTVLHTGSAPSSSTP
FNKEELSAILKFGAEELFKEPEGEEQEPQEMDIDEILKRAETHENEPGPLTVGDELLSQF
KVANFSNMDEDDIELEPERNSKNWDEIIPEDQRRRLEEEERQKELEEIYMLPRMRNCAKQ
ISFNGSEGRRSRSRRYSGSDSDSISERKRPKKRGRPRTIPRENIKGFSDAEIRRFIKSYK
KFGGPLERLDAIARDAELVDKSETDLRRLGELVHNGCIKALKDSSSGTERTGGRLGKVKG
PTFRISGVQVNAKLVISHEEELIPLHKSIPSDPEERKQYTIQCHTKAAHFDIDWGKEDDS
NLLIGIYEYGYGSWEMIKMDPDLSLTHKILPDDPDKKPQAKQLQTRADYLIKLLSKDLAK
KEAMRLSGAGGSKRKKARAKKNKVMKSIKVKEEIKSDSSPLPSEKSDEDDDKLSESKSES
KERSKKSSVSDAPVHITASGEPVPISEESEVLDQKTFSICKERMRPVKAALKQLDRPEKG
LSEREQLEHTRQCLIKIGDHITECLKEYTNPDQIKQWRKNLWIFVSKFTEFDARKLHKLY
KHAIKKRQESQQNNDQNSNLNAHVIRNPDVERLKENANHDDSSRDSYSSDRHLSQYHDHH
KDRHQGDSYKKTDSRKRPYSSFSNGKDHREWDHYKQDSRYYSEREKHRKLDDHRSRDHRS
TLEGSLKDRSHSDHRSHSDHRLHSDHRSSSEYTHHKSSRDYRYHSDWQMDHRASSSGPRS
PLDQRSPYGSRSPFEHSVEHKSTPEHPWSSRKT
NT seq
5142 nt
NT seq
+upstream
nt +downstream
nt
atgaatggacagagtgatgaagaaagtgttagaaacagtagtggagaatcaagccagtcg
gatgatgattctgggtcagcatcaggctctggatcaggttcaagttctgggagcagcagt
gatggaagcagtagccagtcaggtagcagtgactccgactctggatctgactcaggcagt
cagtcagaatctgagtcagatacatcccgagaaaacaaagttcaagccaaaccaccgaaa
gttgatggagcagagttttggaagtctagccctagtattttagctgttcagagatctgca
atgctcaagaaacagcagcagcagcagcagcagcaacagcatccagcttcatctaatagt
ggatcagaagaggattcctctagcagtgaagattctgatgattcatcaagtgcggtcaaa
aggaaaaagcataaagatgaagattggcagatgtctgggtcaggatctccatctcagtct
ggttcagatacagaatctgaagaagaaagagataaaagtagttgtgatgaaacagaatct
gattatgagccaaaaaacaaagtcaaaagcagaaaacctccaagtagatctaagtcaaaa
aatggaaaaaagcttcttggacaaaaaaagagacagattgattcatctgaagatgatgat
gatgatgaggaagattatgataatgacaaaagaagttctcgtcgacaagctactgtcaat
gttagctacaaggaagatgaagaaatgaaaacagattctgatgacctactggaagtctgt
ggagaggatgttcctcaacccgaggaagaggaatttgaaacaatagaaaggtttatggat
tgtcgtattggaagaaaaggagctactggtgctactacaaccatatatgcagttgaagca
gatggtgacccgaatgcaggatttgacaaaaacaaggaagcaggagacgtccagtattta
attaaatggaaaggatggtcccatatccacaacacgtgggagacagaagaaactcttaag
cagcagaatgttaggggaatgaaaaaattggataactataagaaaaaagatcaggaaaca
gtaagatggttgaaaaatgcttcaccagaagatgtggaatactataattgccagcaagaa
cttacagatgatctacataaacagtatcaaatagtggagcgtataattgctcattccaat
caaaagtcagcagcgggttatcctgattattattgcaaatggcagggccttccatattca
gagtgcagctgggaagatggagctctcatttccaaaaagtttcaagcatgtattgatgag
tattttagcagaaaccaatcaaaaaccactccttttaaagattgtaaagtattgaaacaa
agaccaaggtttgtagcactgaagaagcaaccatgctatattggagggcatgagggttta
gaattaagagattatcaactgaatggtttaaattggcttgctcactcttggtgcaaagga
aatagttgcatacttgctgacgaaatgggccttggaaaaacaatacagacgatctcattt
ttgaactatttgtttcatgaacatcagttgtatggaccttttctactagtcgttccactc
tctacgctcacttcctggcaaagggagattcagacatgggcttctcaaatgaatgctgtg
gtttatttaggtgacattaatagcagaaacatgataagaactcatgagtggatgcatccc
cagaccaaacggttaaaatttaatatacttttaacaacttacgagattttactgaaggat
aaggcatttcttggtggtctaaattgggcatttataggtgttgatgaagcacatcgatta
aaaaatgatgattcccttctatataaaactttaatagattttaaatctaaccatcgcctc
cttatcactggaacgcctctacaaaactccctcaaagagctgtggtcattgctacatttc
attatgccagaaaagttttcttcttgggaagattttgaagaagaacatggaaaagggaga
gaatatggttatgcaagcctccacaaggagctggagccatttttattacgtcgggttaag
aaagatgtagaaaaatctcttcctgccaaggttgaacagattttaaggatggaaatgagt
gctttacagaaacagtactacaaatggattttaactaggaattacaaagcccttagcaaa
ggttccaagggcagtacctcaggctttttgaacattatgatggagctaaagaaatgttgt
aaccattgctacctcattaagcctccggataataatgaattctataataaacaagaagcc
ttacaacacttaatccgtagtagtgggaaattgatccttcttgataagttgttaattcgt
ctaagagaacgaggcaatcgagtactcattttttctcaaatggtgcggatgttggatata
cttgcagaatatttgaaatatcgtcagtttccttttcaaagattagatgggtcaataaaa
ggagaactgaggaaacaagctctagatcattttaatgctgagggatcagaggatttctgc
tttttgctttctacaagagctggaggtttggggattaatttagcttctgctgacactgtt
gttatatttgattctgactggaatccacaaaacgaccttcaggcacaggcaagagctcac
cgaattgggcaaaagaaacaggtgaatatatatcgtctagtcacaaagggatcagttgaa
gaagatattcttgaaagggccaaaaagaagatggttttagatcatcttgtgattcaaagg
atggacacaactgggaagacagtactacacacaggttctgctccgtcaagttctactcct
ttcaataaagaagaattatcagccattttgaagtttggtgctgaggagctttttaaggaa
cctgaaggagaagaacaagagcctcaggaaatggatatagatgaaatcttgaagagggct
gaaactcatgagaatgaaccaggccccttaactgtaggagatgagttactttcccagttc
aaggttgccaacttttcaaacatggatgaagatgacattgaattagaacctgaaagaaat
tccaagaactgggatgaaatcattccagaagatcaaagaagacgattagaagaggaagaa
agacaaaaggagcttgaggaaatctatatgcttccacgaatgagaaattgtgcaaaacag
attagtttcaatggaagtgaagggaggcgcagtagaagtagaaggtactctggatctgat
agtgattcaatctcagaaaggaaaaggccaaagaaacgaggaagaccacgcactatcccc
cgtgagaatattaaaggatttagtgatgcagaaattaggcggtttatcaagagttataag
aaatttggtggccctctggaaagattagatgcaattgctcgagatgctgagctagttgat
aagtctgaaacagaccttagacgactaggagaattggtacacaatggttgcattaaagct
ttaaaggatagttcttcaggaacagaaagaacaggtggtagacttggaaaagtgaagggg
ccaacattccgaatatcaggagtacaagtgaatgctaagctagtcatctcccacgaagaa
gaattaatacctttgcacaaatccattccttcagatccagaagaaagaaagcagtataca
atccaatgccacacgaaggctgctcattttgatatagactggggcaaggaagatgattcc
aatttattaattggtatttatgagtatggctatggaagttgggaaatgattaaaatggat
ccagatctcagtctaacacacaagattcttccagatgatcctgataaaaaaccacaagca
aaacagttgcagacacgtgcagactacctcattaaattacttagtaaagaccttgcaaaa
aaagaagctatgagactctctggtgccggaggttccaagaggaaaaaagcaagagctaag
aagaataaagtgatgaagtccataaaagtaaaagaggaaataaagagtgattcttctccc
ctgccgtcagagaagtctgatgaagatgatgataaattgagtgaatccaaatctgaaagt
aaggaacgatccaaaaagtcttcagtatcggatgctccagttcatatcactgcaagtggt
gagccagttcccatatctgaagaatctgaagtccttgatcagaagacatttagcatttgt
aaagaaagaatgaggcctgtcaaagcagctttgaaacaacttgatagacccgaaaaaggc
ctctcagaaagagaacagctagaacatactagacaatgtttaataaaaattggagaccat
atcacagaatgtctgaaagagtacacaaatcctgatcaaattaagcagtggagaaaaaac
ctgtggatttttgtatctaagtttactgaatttgatgcaagaaaattacataaattatat
aagcatgctattaaaaaacggcaagaatctcagcaaaacaatgaccagaacagcaacttg
aatgctcatgtgattagaaatccagatgtagaaaggttgaaagagaatgcaaaccacgat
gacagcagcagggacagttattcgtctgatagacacttatctcagtaccacgatcatcat
aaagaccgacaccaaggagattcttataaaaagactgattctaggaaaagaccctattct
tcatttagtaatggtaaagatcatcgtgaatgggatcactacaagcaagacagcagatac
tacagtgagagagaaaaacacagaaagctggatgatcacaggagtagagatcacaggtca
actttggaaggaagtttaaaagatagatctcattctgatcatcgatctcattcagatcat
cggttgcattcagatcaccggtcaagttctgaatacacgcatcataaatcttccagggat
tataggtatcactcagattggcaaatggaccacagagcttctagtagtggccctaggtca
cctctagatcagcggtctccttatggctccagatctccatttgaacattcagttgaacac
aaaagtactcccgagcatccctggagcagtcggaaaacataa
DBGET
integrated database retrieval system
