Perognathus longimembris pacificus (Pacific pocket mouse): 125340311
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Entry
125340311 CDS
T08928
Symbol
Ciita
Name
(RefSeq) MHC class II transactivator isoform X1
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop04612
Antigen processing and presentation
plop05145
Toxoplasmosis
plop05152
Tuberculosis
plop05164
Influenza A
plop05340
Primary immunodeficiency
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09150 Organismal Systems
09151 Immune system
04612 Antigen processing and presentation
125340311 (Ciita)
09160 Human Diseases
09172 Infectious disease: viral
05164 Influenza A
125340311 (Ciita)
09171 Infectious disease: bacterial
05152 Tuberculosis
125340311 (Ciita)
09174 Infectious disease: parasitic
05145 Toxoplasmosis
125340311 (Ciita)
09163 Immune disease
05340 Primary immunodeficiency
125340311 (Ciita)
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
plop01001
]
125340311 (Ciita)
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
plop04054
]
125340311 (Ciita)
Enzymes [BR:
plop01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
125340311 (Ciita)
Protein kinases [BR:
plop01001
]
Serine/threonine kinases: Other
TAF1 family
125340311 (Ciita)
Pattern recognition receptors [BR:
plop04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
125340311 (Ciita)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
LRR_6
LRR_4
NLRC4_HD2
LRR_8
LRR_14
LRR_9
AAA_16
Motif
Other DBs
NCBI-GeneID:
125340311
NCBI-ProteinID:
XP_048187724
LinkDB
All DBs
Position
23:complement(11484421..11515240)
Genome browser
AA seq
1205 aa
AA seq
DB search
MNHFQAILPQVRSLLSGQQHRQVQALLDSLLGAELLSREYHNALLHEHDGEALARKISLS
LLDNGDLDGAQLGQTWSKLQALMPNGGPGHQHSKGSGQPGTMEVGLLEGGYLELLNSDAD
PLHLYHACDQMDLAGEEEMEFCSEADPETINCDQFTRLLCDVEEDEEAGEAYANIAELDQ
YVFQDSQMEGLSKDIFIEHIGLDEGVGESVEVPAEAGKRNQKRSLLEEHSQDPKRRKPAE
TPAVPILTGSFLVGPVGSDSTLLCPPPTLFSQEIVPGQMHLEGAAQLSVLPSGSSTGCLR
LSAGPFQFISTLPVLPQEHWQILEAGTNISGIFIYHGDLPQASQLFPSTGPPVHSLPKSP
DRPGSTSPFAPSTADLPSMPEAALTSRARVTEDDMAPSPRQGAAEVPKWPEPVEQFCHWL
RDKYRAEPAGPDGHLVEVDLVRARLEKGSSKSQERELATLDWTEQQLARGGLVEVLLSTS
DCRPAGETQVIAVLGKAGLGKSHWARAVSRAWACGQLPQYDFVFHVPRHCLDHLGDTYRL
QDLLCPAGPHSQAPDDRVLSHIVRRSSHVLLILDGFEELEAQDGFVHSACGAVRSEPCSL
RGLLAGLLQGKLLRGCTLVLTARPRPRLAQCLSKAHALFEVPGFSAEQAQTYLRRYLEDA
GVPEDPERALALLREQPFLLSHGHSPDVCQAVCQLSKALLQAGTEAQLPCTLTGLYVGLV
GPAARDSPPGALAGLAKLAWELGRRHQRTLHEDQFPSAEVRTWAVAQGLVRAAPEAAEAQ
LAFTSFPLHCFLGALWLAQSSDIKDKELPQYLALTPRKKRPYDNWLAGAPRFLAGLIFQP
RACCLAALLGPAVAARADRKRKVLTRYLKRLQLGTLRVAQVLELLHCAHEAQDPSIWQHV
LWGLPENLSFLGTRLTPPDAHVLGKALEAAGRDFSLDLRSTGLDLSGLGSLVGLSCVTRF
RAALSDTASLWESLRQRGETPLLWAAEEKFTIEPFKAKSLKDLEDLSRLVQTQRARSCSD
HLAGDLPAVRDLKKLEFALGPVLGVQAFPKLVRILPAFSSLQHLDLDSLSENKIGDEGVA
QLSATFPLLKALETLNLSQNSITDVGACQLAEALPSLAATLLRLSLYNNCIGDKGAESLA
QVLPDMGSLRVMDVQYNKFTAVGAQQLAASLRKCPHLDTLAMWTPTIPFGVQEHLQQLDS
RISLR
NT seq
3618 nt
NT seq
+upstream
nt +downstream
nt
atgaatcacttccaagccatcttgccccaagtgcggagtcttctgtctggccagcagcac
cggcaggtgcaggccctgctggacagcctgctgggggctgagctcctgtctcgggagtac
cacaatgccctgctccacgagcacgatggcgaggcattggccaggaagatctccctgagc
ctgctggacaacggggacctcgatggggcccagttgggccagacttggagcaagctgcag
gccctgatgcccaacgggggcccgggccaccaacattctaaaggcagtgggcagccaggc
accatggaggtgggcctgctggagggcgggtacctggagcttctcaacagtgatgcagac
cccttacacctctaccacgcctgcgaccagatggacctggctggagaagaagagatggag
ttctgctcggaagccgacccagagaccatcaactgcgaccagttcactaggctgctgtgt
gatgttgaagaggatgaagaggctggggaggcttacgccaacattgcggaactggaccag
tatgtgttccaggactcccagatggagggcctgagcaaggacattttcatagagcacatt
gggctcgatgagggggtcggtgagagtgtggaggtgccagctgaagcaggaaagcgaaat
cagaaaagatccctcctggaggagcactcccaggaccccaagcgcaggaagccagctgag
acccctgctgtgcccatcctgactggcagtttcctggtaggaccagtaggcagtgactct
accctgctctgcccaccacctactctgttcagccaggaaatagtaccaggccagatgcac
ctggagggagctgctcagctgtcagtgctcccttcggggtcctccactggctgcctccgt
ctttctgctggacccttccagttcatctcgactctccccgtcctgccccaggagcactgg
caaattttagaggctggcacaaacatctctggcatatttatctaccatggtgacttaccc
caggccagccaactgtttccttctactggtcctcctgttcacagcctccccaaatcccca
gaccggccgggctctaccagcccctttgctccatccacggctgacctgcccagcatgcca
gaagcagcgctgacttcccgtgcgagggtgacagaggacgacatggccccctccccacgc
cagggtgctgcagaggtcccgaaatggcctgagcccgtggagcagttctgccactggctt
cgggataagtaccgggccgagcctgcaggcccggacggccacctggtggaggtggacctg
gtgcgggccaggctggagaagggcagcagcaaaagccaggagagggagctggctaccctg
gactggacagagcagcagctggcccgtgggggtctggtcgaggtgctgctgtccaccagt
gactgccgaccagcaggagaaacacaagtgattgccgtgctgggcaaggccggcctgggg
aagagccactgggcccgggcggtgagcagggcctgggcatgcggccagctcccccagtat
gacttcgtcttccatgtcccccgccactgcctggaccatctgggggacacctaccgcctg
caggatctgctctgccccgcgggcccgcactcccaggccccggatgacagagtcctcagc
cacattgtgaggcggtccagtcacgtcctgcttatcctggatggcttcgaggagctggaa
gcccaggacggctttgtgcatagcgcatgtggtgctgtgcgctccgagccctgctccctc
cgtgggcttctggccggcctgctccaggggaagctgctgcggggctgcacgctggtcctc
accgcccggccccggccccgcctggcccagtgcctgagcaaggcccacgccctgttcgag
gtgcccggcttctctgcggagcaggctcagacttacctaaggcgctacttggaggacgct
ggggtgcccgaggacccagagagggccctggcgctcctgagggagcagccgtttcttctc
agccacgggcacagccctgacgtgtgccaggcagtgtgccagctctccaaggccctgctg
caggcgggcacagaggcccagctgccctgcacgctcacgggactctacgtgggcctggtg
ggtcctgctgccagggacagccccccaggggccctggcaggcctggccaagctggcctgg
gagctgggccgccggcaccagcgcaccttgcacgaagaccagttcccctcggcggaggtc
aggacgtgggccgtggcccagggcttggtgcgggcggccccagaggctgccgaggcccag
ctggccttcaccagcttcccgctgcactgcttcctgggggccctgtggctggcccaaagc
agcgacatcaaggacaaggagctgccgcagtacctggcgctgacgcccaggaagaagaga
ccctatgacaactggctggccggtgccccacgcttcctggctggcctcatcttccagccc
cgcgcctgctgcctggcagccctgctggggcctgcggtggccgccagagcggacaggaag
cggaaggtgctcacaaggtacctgaagcggcttcagctggggacgctgcgggtggcgcag
gtgctggagctgctgcactgcgcccatgaggcgcaggaccccagcatctggcagcatgtg
ctgtgggggctccccgaaaacctgtccttcctgggcacccggctcacgccccccgatgcc
cacgtgctgggcaaggccttggaggccgccggccgagacttctccctggacctccgcagc
actggccttgacctctccggcctgggcagcctcgtgggactctcctgtgtcacgcgtttc
agggccgccttgagtgacactgccagtctgtgggagtcactgcggcagcgtggggagacc
ccgctactctgggcagccgaggagaagttcaccatcgagccctttaaggccaagtctctg
aaggacttggaggacctgagccgcctggtgcagacccagagggcgagaagttgttctgac
cacttggccggggacctgcctgcagtccgagacttgaagaagctggaatttgcattgggc
cctgtcctgggtgtccaggccttcccaaagctggtgaggatccttccggccttctcttcc
cttcagcatcttgacctggattccctgagcgagaacaagattggggacgagggggtcgca
cagctctcagccaccttcccattgctgaaagcactggagacgctcaatctctcccagaac
agcatcaccgatgtgggagcctgccagcttgccgaggccctgccctccctcgctgccacc
ctcctcaggcttagcttgtacaataactgcattggcgacaaaggggctgagagcctggca
caagtgctccccgacatggggtccctgcgggtgatggatgtccagtacaacaagttcacg
gccgtgggtgcccagcagctggccgccagcctgaggaagtgcccccacctggacacgctg
gccatgtggacacctaccatcccctttggcgtccaggaacatttgcagcagctggactca
cggatcagcctgagatga
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