Perognathus longimembris pacificus (Pacific pocket mouse): 125340449
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Entry
125340449 CDS
T08928
Symbol
Vps13a
Name
(RefSeq) vacuolar protein sorting-associated protein 13A isoform X1
KO
K19525
vacuolar protein sorting-associated protein 13A/C
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
plop04131
]
125340449 (Vps13a)
Membrane trafficking [BR:
plop04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
125340449 (Vps13a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VPS13_N
VPS13_M
VPS13_VAB
VPS13_C
RRM_fung
Motif
Other DBs
NCBI-GeneID:
125340449
NCBI-ProteinID:
XP_048188025
LinkDB
All DBs
Position
1:complement(91046823..91225021)
Genome browser
AA seq
3226 aa
AA seq
DB search
MRSVRSRLRPPWARAKAARPASTGTPAGAAWEPVNRGSSRERRLEKKERWRRPLSSLRPR
KMVFESVVVDVLNRFLGDYVVNLDTSQLSLGIWRGAVALKNLEIKENALSQLDVPFKVKV
GHIGNLKLIIPWKNLYTQPVEAVLEDIYLLIVPSSRIKYDPLKEEKQLIETKQQELKRIE
EAKQKVIDQEHHEEKQDTFAEKLVTQIIKNLQVKISSIHIRYEDDITNRDKPLSFGISLQ
NLSMQTTDQNWIPCLHDESEKLVRKLIRLDNLFAYWNVQSQMYYLNDYDESLDNLKTGIV
KENIIPDGFDFVFRPISANAKLQMNRRSDFDFSDPKINLDVELHNIAIEFNKLQYFSVME
LLESVDMMTQNLPYRKFKPDVPLHYHAKEWWAYAIHGILEVNVCPSLRMWSWKHIREHRQ
KVKQYKELYRKKLTNKRPSGEILISLQELEKTLDVFNITIARQQAEVEVKKAGYKIYREG
IKDPEDNKGWFSWLWTWSESNTKQQPDIKPGILEEMLSPEEKALLYEAIGYSETAVDPTL
PKTFEAMKFFVHLKSMSIVLRENHHKPELIDIVVEEFSTLIVQRPGAQAIKFETRIDSFY
ITGLPDNSEKPYLLSSLDNMSLFQIMFEINPLDETVAQRCIIEAEPLQIIYDARTVNSIV
EFFRPPKDVRLAQLTSATLTKLEEFRNKTATGLLYIIETQKVLDLRINLKASYIIVPQYG
IFSPTSNILLLDLGHLKVTSKSRSELPDVKLSGTKLEELMHRAYDSFDVQLTSIQLLYSR
VGDNWKEARKLNVSTQHILVPMHVSVELSKAMVFMDIRMPKFKISGKLPLVSLRISDKKL
QGIMELVESIPKPTPVADVSAPVKSLQIQSSMPTSQITQKIIPFLELSSMTEDDSEEEFF
DALSSPVDESPPIITGAKITRHRKSQKQDYSLNLTEFKIRFEVAEVLIQFYHLVEDCEIS
VVEIDVLGLGTEVMIRTCDLKANAFLKEFCLKCPEYLDENKKPIYLVTTLDNTMEDLLTL
EYMKAEKSAPDLKSTYNNVLQRIKVNFSSLDIHLHTEALLNTINYLNNILPQSVEGSPVS
VMETEDKGDVVKKLALKLSMNEDIITLQILAELSCLRIFIQDQKRNIAEIKIEGLDSEVI
MRPLVTEINAKLRNIIVLDSDVMALYKKALYITGKEVFSFKMVSYVDATAGSAYTDMNIV
DLKVLLTVGCIEVVFVTKFLYSVLAFIDNFQAAKKALAEATAQAAEMAATGVKELTQRSS
RLALDVNINAPVVVIPQSPVSQNVFVADFGLITMTNMFTMVTESQCNPPPVIDLITIKLS
EMRLYRSQFIDDEYQEVLDLLLPLNLEVIVERNLSWGWYQEVPCFNVNAQLKPMEFILSQ
EDLTTIFKTLHGNLHYKDVSAAPTVTKEPSGVSSGVTSESYNTAGTSVVTAAVVEVHSHA
SQVKTTLNVSFRTDYLTMVLYSPDPQQVSFTDVRDPSLMLAEFKLENIISSLKMYTDYSI
SSSFSVKNCILDDKRPHVKKATPRMIGLTVGFDKKDMMDVKYRTVRDGSVTDAVFQEMYI
CASVEFLMTVANVFFEAYTTGSAVETCVQTWTSKEVPVQQLVKWEVNILIKNPEIVFVAD
MTRHDAPALVITTQCEICCKGDIENTTITAAVKDLQVRACPFLPVKRKGKITTVLQPCDL
FYQATQIGSGPQVIDISVKSLTLKVSPVIINTMITITSALYTTKETIPEENVFSIAHLWE
KKDTKTLKMWFLEESSETEKVATTTELIPRGEIMKVNIDSIFIVLEAGVGHRTVPMLLAK
SHFSGECKNWSTLINLHCQIELEVHYYNEMFGVWEPLLEPLEIDQTEDFRPWNLGIKMKK
KAKKAIVESDTEEENYKVPEYKTVISFYSKDQLNITLSKCGLVMLNNLVKAFTEAATGSS
PVFIRDLAPFMILNSLGLTVSVSPSDSFNVLNAPMAKSHILSNEENLSMDYALTKDNDHF
NAMTSLSSKLFFILLTPDNHSTADKIPLTKVGRRLYTVRHRESGVERSIVCQIDAVEGSK
KVTIRSPVQIRNHFPAPISVYEGNTLLGIASPENEFNVPLSSYRSFLSLKPEDEDYQVCE
GLDFEEMIKHEGTLIKKKCQSANPSKTPFIINIVPEKDNLTSLSVYSEDGWDLPYIMHLW
PPIILRNLLPYKIAYYVQGIENAVSTLNEGHSAQICTVQMDRAKLHLKLLDYLNHDWKSE
YHIKPNQQDISFINFTCITEMEKTDLDIAIHMTYNTGQTVVAFHSPYWMVNKTGRMLQYK
ADGIHRKHPPNYKKPVLFSFQPNHFFNNNKVQLMVTDSELSDQFSIDTVGSHGAIKCKGQ
RMEYQVGVTIDLSSFNITRIVTFTPFYMIKNKSKYRVSVAEERSDKWLSLDLEECIPFWP
EDVSSKLLVQVERNTGPPKRIYLNKQENCILLRLNNELGGIIAEVNLAEHSTVVTFSDYH
DGAATFLLINHTKNDVVQYKQSSLGEIEDALPPGKAVFYTWADPVGSRKLKWSCGKSHGE
VTQKDDMMTPIISGEKTIYLVSFFEGLQRIILFTEDPKVFKATYESEKAELAEQEIVLAL
QDVGISLVNNYTKQEVAYIGITSSDVVWETKPKKKSRWKPMSVKHNEKLEKEFKEYTETS
PAEDKIIELETHVSVRLTPNGNNMKILHPNLIALRRNYLPALKVEYCTSAHQSSFRIQIY
RIQIQNQIHGAIFPFVFYPIKPPKSVTMDSAPKPFTDVSIVMRSAGHSQISRIKYFKVLI
QEMDLRLDLGFVYALADLMTEAEETETTEVDLFHKDIEGFKEEYETASMVDQSQVSLYEY
FHISPIKLHLSVSLSSGREETKDSEQRGGLIPVHSLNLLLKSIGATLTDVQDVVFKLAFF
ELNYQFHTTSELKSEVVRHYSKQAIKQMYVLILGLDVLGNPFGLIREFSEGVEAFFYEPY
QGAIQGPEEFVEGMALGFKALVGGAVGGLAGAASKITSAMAKGVAAMTMDEDYQQKRREA
MNKQPAGLREGITRGGKGLVSGFVSGITGIVTKPIKGAQKEGAAGFFKGVGKGLVGAVAR
PTGGIIDMASSTFQGIKRATETFEVESLRPPRFFNEDGVIRPYRLRDGTGNQMLQVMENG
RFAKYKYFTHVMINKSDMFMITRRGVLFVTKGTFGQLTCEWQYSFDEFTKEPFIVHGRRL
RIEAKERVKSVFHAKEFGKIINFKTPEDARWILTKLEEAREPSPNL
NT seq
9681 nt
NT seq
+upstream
nt +downstream
nt
atgcgtagtgtgcgcagccgcctccgccctccctgggctcgcgctaaagcggcgcgtccg
gccagcactggcaccccggcgggagccgcctgggagccggtgaaccgagggtcctcgagg
gagaggcgcctggagaaaaaggagcgctggaggcggccactgtcttccctgcggccgagg
aaaatggtattcgagtcggtggtcgtggacgtgttgaaccggttcttgggagactacgtg
gtgaacctggacacgtcccagctctctctgggcatctggagaggagctgtagccctcaag
aatcttgaaattaaagaaaatgccttgagtcaactggatgtcccattcaaagttaaagtt
ggtcatataggtaatctgaaacttataattccatggaaaaacctttatactcaaccagtt
gaagccgttttagaagacatttatttactcatagtgccttcttctagaataaaatatgat
cctttaaaagaagaaaaacaacttattgaaacaaaacaacaggaattaaaaagaatagaa
gaagcaaaacaaaaagtaatagatcaagaacatcatgaggagaaacaggacactttcgca
gaaaaattagttactcagatcataaaaaatcttcaagtgaaaatttccagcatccatatt
cgttatgaagatgatatcacaaatcgagacaaaccactatcatttggcatttcccttcaa
aatctcagcatgcagacaactgatcaaaactggattccatgtttacatgatgagtctgag
aagttggttcggaagttaatacgattggacaatctttttgcctattggaatgtgcagtct
caaatgtattatcttaatgattatgatgagtcattggacaacttgaagactggtattgtc
aaggaaaatattattcctgatgggtttgattttgtatttcgccccatatctgctaatgcc
aaacttcagatgaatcgccgatcagattttgacttttctgatccaaagataaacctggat
gttgagttacataacatagcaattgaatttaataaactacagtatttcagtgttatggaa
cttcttgaatcagttgatatgatgacccaaaatttgccatataggaaatttaaacctgat
gtgcctcttcactaccatgccaaggaatggtgggcttatgctatacatggtattcttgaa
gtaaatgtttgccccagtttacgaatgtggtcctggaagcatattagagaacatagacaa
aaagtgaaacagtataaagaactatatagaaaaaagttaacaaataaaaggccatctggt
gaaattctcatctctttgcaggagttggaaaaaactttggatgtctttaatataaccata
gctagacagcaagcagaagttgaggtaaagaaggctgggtacaagatttacagagaagga
attaaagatccagaggataataaaggatggtttagttggctgtggacttggtcagagtca
aatactaaacagcaacctgacattaaacctggaattcttgaagaaatgctatcacctgaa
gaaaaagctttactctatgaagcaattggctatagtgaaacggcagttgacccaactttg
cccaaaacatttgaagccatgaagttttttgttcatttgaaaagtatgtctattgttcta
agagaaaaccaccacaaacctgagctgatagacattgttgtagaagaatttagcactttg
attgtacaaagaccaggcgcacaagcaataaaatttgaaaccagaattgattcattttat
attactggcttaccagataattcagaaaaaccctacctcctatcatcattggataatatg
tcactcttccaaattatgtttgaaataaatccattagatgaaactgttgcccaaaggtgt
atcatagaagctgaacctttacaaataatatatgacgcaaggacagtgaatagtatagta
gagttcttcagacctccaaaagatgtacgtctagcacagctcacatcagcaactttgaca
aaacttgaagaatttcgaaataaaacagcaacaggtctactgtatattattgaaacacag
aaagttcttgatctcagaattaatttgaaggcttcatatattattgtcccacaatatgga
atttttagtcctacgtcaaatatacttcttttggatcttggtcatctaaaggtgacaagt
aaaagtcgttcagagttaccagatgtaaaactaagtggaaccaaacttgaagagttaatg
catagagcttatgattcttttgatgttcagcttacaagcatacaattgctttatagtaga
gttggtgataattggaaagaagcacgaaaactgaatgtatctacacagcatatattggta
cccatgcatgtcagcgtggagctctctaaagctatggttttcatggatatcaggatgccc
aaattcaagatttctggaaagttacctcttgtttctttacgaatctctgataaaaaatta
caaggaattatggaactggttgaaagcattccaaaacctacaccggtagctgatgtatct
gcccctgtcaagtcattgcagattcagtcatctatgccaacatcacagatcacacagaaa
ataattcctttcttggaactgtcctccatgactgaagatgattcggaggaggaatttttt
gatgcactgtctagtcctgtggatgaatctcctccgataattactggagctaaaattact
cgacatagaaagtcacaaaaacaagactattcactgaatttgacagaatttaaaatacga
tttgaagtagcagaggttttgattcagttttatcaccttgtggaagattgtgaaatatct
gtggtagaaattgatgttttaggattgggcacagaagttatgattagaacgtgtgatttg
aaagcaaatgcgtttttgaaagagttctgtttaaagtgtccagaatacttagatgaaaac
aagaagcccatttatttggtcacgacactggataacaccatggaagatctgttaacacta
gaatatatgaaggctgaaaaaagtgcgcctgacttgaaaagtacctataacaatgtttta
caacggattaaggtgaatttttcctctttggatatccatttacacacagaagcacttctg
aatacaataaattatcttaacaatattcttccacaatcagtagaaggatccccagtatct
gttatggagactgaagacaaaggagatgtcgttaaaaaattagctttaaagctatccatg
aatgaagatattattaccttgcagattttagcagaattatcatgtttacggatttttatt
caagatcagaagcgaaacattgctgaaattaagatcgaaggacttgattcggaggtgatt
atgaggcctttagtaactgaaataaatgcaaagctaaggaatataattgtattggattcg
gatgtaatggctctgtacaaaaaggctctttatatcactggcaaagaagttttcagcttc
aaaatggtttcttacgtggatgccactgctggctctgcatacacagatatgaatattgtg
gatcttaaagttcttttaactgtcggatgcattgaagtagtgtttgtcacaaaatttctg
tattctgtattggcttttatagataattttcaagcagctaaaaaagccttggctgaagca
actgctcaggcagcagaaatggctgcaactggtgttaaggagctgactcaaaggagttcc
aggttggcattagatgttaacatcaatgctccagttgttgtcatcccacagtctccagtt
tctcagaatgtttttgttgctgattttggactgattacaatgacaaatatgtttactatg
gtaacagagagccagtgcaatcctccacctgttattgatttaataacaataaaactgagt
gaaatgagactatacaggtctcaatttattgatgatgaatatcaggaagtactggatcta
ctactgcctctaaaccttgaagtgattgttgagcgtaatttatcctggggttggtaccag
gaagttccttgttttaatgtaaatgctcagctgaaaccgatggagttcattcttagtcaa
gaagatttgacaactatttttaaaacattacacggcaatttacactataaagatgtcagt
gccgctcctactgtaactaaagaaccaagtggtgtttctagtggagtcaccagtgagtca
tataatacagcaggaacatctgtggtgactgctgctgtggtagaggtgcactcacatgct
tctcaggttaagacaacactaaatgtgagcttcagaactgattatctcaccatggtgctg
tatagtccagatcctcaacaggtctcctttacagatgttcgtgatccatctctgatgctt
gctgaatttaaattggagaatattataagttctttaaaaatgtatacagattactcaata
tcctcttctttctcagtaaaaaactgtattttggatgataaaaggccccatgtcaagaaa
gcaactcctagaatgataggactaactgttggctttgacaaaaaggacatgatggatgta
aaatatagaacagtcagagatggttctgtgactgatgcagtgtttcaagaaatgtatatt
tgtgcaagtgtggaatttctgatgactgtcgcaaatgtcttttttgaagcctacactaca
ggctctgctgtagaaacctgtgttcaaacatggacttctaaggaagtacctgtacagcag
ttagtgaagtgggaagtgaatattctaattaaaaatcctgaaattgtgtttgtggctgac
atgacaagacatgatgctcctgctttagtcattacaacacagtgtgaaatatgctgtaaa
ggtgacattgaaaacactacaataactgctgctgttaaagacctccaagtcagagcatgc
ccatttctcccagttaagagaaaaggcaaaatcactactgttttgcagccctgtgacttg
ttttatcaagctactcagataggttcaggtccacaagtgattgacatatcagttaaatct
cttacactgaaggtttcacctgttatcataaacaccatgataactataacttcagcactt
tatacaactaaggaaacaatcccagaagaaaatgttttttctattgcccacttatgggaa
aagaaggatacaaagactttaaaaatgtggtttcttgaagaatccagtgaaactgaaaaa
gttgctaccacaactgaattgattccccgaggagagataatgaaagtgaacattgactcc
atttttatagttcttgaggcgggagttggtcataggacagtgcctatgctactggcaaag
tcgcatttttcaggggaatgcaaaaactggagtactcttataaatctacactgtcaaatt
gagctagaagttcattattataatgaaatgtttggtgtatgggagcctttgcttgaacct
ttagaaattgatcagactgaggattttagaccatggaatcttggaataaagatgaaaaaa
aaggcaaaaaaggccattgttgaatcagatacagaggaagaaaattacaaagtgccagaa
tataaaactgtcatcagcttctattcaaaagaccagttgaacattacattatccaaatgt
ggccttgtgatgttaaataatttagtcaaggcatttacagaggctgctactggatcttca
cctgtcttcataagagatctagcaccatttatgattttaaattctcttggacttactgtt
tccgtttcaccaagtgattcttttaatgtacttaatgcccccatggcaaaatcacacata
ctgagtaatgaggagaatttaagtatggattatgcactgactaaggacaatgatcatttc
aatgcaatgaccagcttaagcagcaaactcttcttcattcttcttacacctgataatcac
tctactgctgataagatacctttaacaaaagtgggacgacgtctgtatactgtaagacac
agagaatctggagttgaaaggtctattgtatgtcaaatcgatgcagtagaaggaagtaag
aaggtgacaattcgctcaccagtgcagattagaaatcattttccagccccaatctctgtt
tatgaaggaaacactttattaggaattgcatcacctgaaaatgaattcaatgtaccatta
tcatcctaccggtcatttctttctctgaagccagaggatgaggattatcaagtgtgtgaa
ggacttgattttgaagaaatgataaaacatgaaggaacacttataaagaagaaatgtcaa
tcagcaaacccctcgaagacaccattcattattaacattgtcccagaaaaggataacttg
acatctctctcagtgtattcagaagatggttgggacttaccatacataatgcatttatgg
ccaccaatcatactccgaaatcttcttccttacaaaattgcttattatgtacaggggatt
gaaaatgcagtttctactctcaatgaaggacactcagcccagatttgtactgtacagatg
gatagagccaagctgcacttaaaattacttgactatcttaatcatgattggaaaagtgaa
taccatataaaacctaatcaacaagatattagcttcatcaattttacctgtattacagaa
atggaaaagactgatttagatattgccatccatatgacttataatactggccagactgtt
gtggcatttcatagtccatactggatggtcaataaaactggtagaatgttacagtacaaa
gctgatggaattcatcgaaaacatccacctaactataaaaaaccagttcttttttctttt
cagccaaatcatttttttaataacaataaggttcagcttatggtaactgatagtgagttg
tcagatcagttttcaattgatactgttggtagtcatggagccattaaatgtaaaggccaa
agaatggaatatcaagttggtgttactatagacctcagcagtttcaacattaccaggatt
gtgacatttacaccgttttatatgattaaaaacaaaagcaaataccgtgtatcagtggct
gaagaaagaagtgataaatggctctcgcttgatttagaagaatgtattcccttttggcct
gaagatgtttccagcaaacttctggttcaagttgaaaggaacacaggtcctcccaaaagg
atatatcttaacaagcaagaaaattgtatcttactgcgtctgaataatgagcttggaggg
attatagcagaagttaatttggctgagcattctacagttgttacattttctgattatcat
gatggagcagctacattcctattaataaatcacaccaagaatgatgtggttcagtacaaa
caaagttctctcggtgaaatagaagatgcccttcctcctggaaaagcagtgttttatact
tgggctgacccagtgggctctagaaagctgaaatggagttgtgggaaaagccatggagaa
gtaacacaaaaggatgatatgatgacacctattatttcgggagaaaagaccatttattta
gtttcattctttgaaggcttgcaacgcattattttattcactgaagatccaaaggtcttt
aaagcaacctatgaaagtgagaaagcagagttagcagaacaagaaattgtgttggcatta
caagatgttggaatatctcttgtcaacaattacacaaagcaagaagtagcctatataggc
attacaagttctgatgtggtttgggagacaaaacccaagaaaaaatcaaggtggaaacca
atgagtgtaaagcacaatgagaagttggaaaaagaatttaaggaatatactgaaacttcg
cctgcagaagataagattattgagttggaaacacatgtttcggttcgtttaacacctaat
ggtaataacatgaaaattctgcatccaaatttaatagctctacgaaggaattatcttcca
gcattaaaagtggaatattgcacatctgcccatcagtcatcatttagaattcagatttat
agaatacagatccaaaatcagattcatggtgctatttttccatttgtgttttatcctatt
aagcctccaaagtctgtcaccatggattcagcaccaaagccctttacagatgtcagtatt
gttatgagatctgcaggacattcccagatatcacgaattaagtatttcaaagtattgatt
caagaaatggatctcaggttagatcttggctttgtctatgctttagctgaccttatgaca
gaagctgaagaaacagaaacaacagaggttgatctttttcataaagatatagagggtttt
aaagaagaatatgaaactgcctcaatggtagatcaatctcaagtcagtctctatgaatat
tttcatatatcgcctataaagttgcatttaagtgtttcactgagttctggtagagaagaa
actaaagattcagaacaacgtggaggactaattccagttcattccttaaatcttttgctg
aagagtattggtgccacccttacagatgttcaggatgttgtttttaagcttgcctttttt
gaactcaactatcagtttcatacaacatctgaactaaaatctgaagtagtaaggcactat
tcaaagcaggccattaagcagatgtatgtactcattcttggacttgatgttttgggaaat
ccctttggcttaattagagaattttcagaaggtgtagaagcatttttttatgaaccttat
cagggggccatccagggacctgaagagtttgtggagggaatggcactaggatttaaggcg
ctagttggtggagctgttggtggattagctggtgctgcctccaaaatcaccagtgctatg
gctaaaggggtagcagctatgacaatggatgaagactaccagcagaagagaagagaagct
atgaataaacaaccagctggccttagagaaggcatcactcgtggaggcaaaggcttagtt
tctggttttgtaagtggcattacaggaattgttacaaaacctattaaaggagctcagaaa
gaaggagcagctggtttcttcaaaggggttggaaaaggtttagttggagcagtggccagg
ccaactggaggcatcatagacatggctagcagtacctttcagggaatcaaaagagctaca
gaaacttttgaagtggagagtctacgacctcctcggttctttaacgaagatggagttatt
agaccttacaggttgagggatggtactggaaatcaaatgctacaggtgatggaaaatgga
agatttgcaaaatacaaatattttactcatgtcatgatcaataagtcagacatgttcatg
ataactagacgtggtgtattgtttgtgacaaagggaacatttggacaacttacttgtgag
tggcagtatagttttgatgaatttaccaaagagccattcattgttcatggaagacgactg
cgcattgaagccaaggaacgggtgaaatctgtattccatgccaaagaatttggaaaaata
attaacttcaagaccccagaggatgctaggtggatccttacaaagctggaagaagcaaga
gaaccgtctccaaacttgtga
DBGET
integrated database retrieval system
