Perognathus longimembris pacificus (Pacific pocket mouse): 125340471
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Entry
125340471 CDS
T08928
Symbol
Palb2
Name
(RefSeq) partner and localizer of BRCA2 isoform X1
KO
K10897
partner and localizer of BRCA2
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop03440
Homologous recombination
plop03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
125340471 (Palb2)
03460 Fanconi anemia pathway
125340471 (Palb2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
plop03400
]
125340471 (Palb2)
DNA repair and recombination proteins [BR:
plop03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA complex
125340471 (Palb2)
FA (Fanconi anemia) pathway
Downstream FA components
125340471 (Palb2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PALB2_WD40
Motif
Other DBs
NCBI-GeneID:
125340471
NCBI-ProteinID:
XP_048188045
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All DBs
Position
23:complement(3062918..3090677)
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AA seq
1141 aa
AA seq
DB search
MDEVPGKSLSCAEKEQLEEKLALLKKEYRRTLARLQRAQRAEKIKNSKKTARQGGLLDQQ
ITSQTTQSEPKNEGCPYDQLQVYTQLNKDTGEKTSLTFVEPKSFNPKDGSEEGLYIQNTD
DIQEHFPYKVSGLDGKKRQNELPGKREKQPQRMFASQETECSFDTSSLIVSGKRTRNQEA
INSKDPSSSATVIGSLTSPQPEIQGSPAPATEAARKMAVIPPSADSGRGNEISKETIIPL
HSASDSSYHQHCRPSEGHWELSTPTFQNTSPALPVNLQAQGRKMSVCTDDPIVNNIVGGS
GQLPRSPNLEADNSCCTNELTCRNLAPNISQDLKEQNHHTGKSLEPPGNPLNSKNENVQE
KKALDQLKSLNLEAGEPVSTESQTHSCTVVEGLLFPAEYYVRTTRRMSNSQRKIALEAVI
QSHLGVRKKGFKSKEKGVTKSVKLSNEEAGQSEISMSDTSSGVLSSSPSQELLSQSEDHS
PSVDPKNNHCPRRPVTKSSARRHRGKRKSAHTLALDQCEPLFPSSSTFSVEWFKRQSENT
AIQDFQLPDEDFGPLKLEKLKSSDKPIEPPESKAYAKKLPQEEQSPLCTAAEGKDLEEEA
MFVPGKAHPQMPSPKNQTPHKGLSSSMLLFTPLNTATAAVGNESARPATQVCSPAFPTLG
TTPAFSSPASCDGMSARGDGPACSLPHLAPLEDTVSLPRTPKQSVYTANPLKLVTNLHVP
GRRGQSACDRDCGPQATPAPTESFTFRENQLCGNACLALHGHSTEQPETAHPPAGESLNP
GSLQLLSKLKNPCSSCSVDVSALWWDQAGLKEPCIVTACEYAVSLWKPLRTWQWEKMYTW
HFSEVPVLQIVPVPNVCNLVCVALGTLEIREIRALLWSCGDESERHVLLQSGNIKAVLGL
TKRRLVSSSGGPCNQQVEVMTLAEDGRSKEKRFLMPPEETVLTFAEVQGMPEALLGTTVM
SNVVIWNLRTGQLLKKMHMAGSYQGSVCHKAYSEMGLLFVVLSHPCAKESECLGSPVFQL
VAINPKTALSLGVLLYCLPQEQAGRQVPGRGCERSLRSCCLDFWDNCHLGLGAGALCCPP
ATQSRSKLVFCEMVSYRFSFAGWTERWKYIHISLLMNYRENTFLGAFDLLALFGDIGRTP
E
NT seq
3426 nt
NT seq
+upstream
nt +downstream
nt
atggacgaggttcctgggaagtccctgagctgtgcggagaaggaacagctggaggaaaaa
cttgcacttttgaaaaaggaatacaggaggacactggcccgcctccagcgtgcccaaaga
gctgagaagattaagaattctaagaaaacagcaagacaaggtggcttgctggatcagcaa
atcacatcgcagacaacacagtcagagcctaaaaatgaaggatgtccttacgaccaatta
caagtctacacccaacttaacaaagacactggagaaaagacttctctgacctttgttgag
ccaaagtcctttaaccctaaagacggctcagaagaaggattatatatacaaaatacagat
gacatccaagaacattttccctataaagtcagtggccttgatggtaagaaaaggcagaat
gaactgccagggaagagagaaaagcagccccaaagaatgtttgcttctcaggagacagag
tgttcctttgacaccagttcactcattgtctctggaaaaagaactaggaatcaggaagca
atcaatagcaaagatcctagttcatcagcaactgtaataggttccctcacaagtcctcag
cctgaaattcagggctctccagcaccagctactgaagctgctagaaagatggcagtaatt
ccaccaagtgctgattcaggaagaggaaatgaaatctccaaggagaccataattccttta
cattctgcatcagacagcagctatcatcaacattgtaggccttctgaaggtcactgggaa
cttagtactccaacatttcaaaataccagtcctgctctacctgttaacctgcaagcacaa
ggcagaaaaatgtccgtctgtacagatgacccaatagtaaataacattgttggtggcagt
ggccagctgcctagaagtcctaacttagaggcagacaattcatgttgtacaaatgaactc
acttgcagaaacttagcaccaaatataagccaagacttaaaggaacaaaatcatcacact
ggaaagtctttagaacctccaggtaaccctctgaatagtaaaaatgagaatgttcaggaa
aagaaggccctagatcagcttaagagtcttaacctagaagcaggagagcctgtttctaca
gaaagtcaaacacattcttgcacagtggttgaaggccttttgtttcctgcagaatactat
gttagaacaacccgtcgcatgtccaacagccagaggaaaatagccctggaagctgtgatt
caaagtcacttgggtgtcagaaagaaagggtttaaaagtaaagaaaaaggagtaactaaa
agtgtaaagctttctaatgaagaagctggacaaagtgaaatcagcatgtcggacacaagc
tcaggagtgctaagttcaagtccttctcaggaacttctgtcacaaagtgaagaccactct
ccctcagtagatcctaaaaacaaccactgtcctaggaggcctgtcaccaagtcatctgct
agaagacaccgaggaaaaagaaagtcagcccacaccttggccctcgatcagtgtgaacca
cttttcccatcttctagcacattcagtgttgagtggttcaaacgccagagtgaaaacaca
gcaattcaggattttcagttacctgatgaagactttgggcctctgaagcttgaaaaactg
aagtcctcagacaaacccattgagcctcctgaatcaaaagcatatgcaaagaagcttcct
caagaggaacagagtcctctgtgcacagctgcagaagggaaggacttggaagaggaagct
atgtttgttccaggaaaagcacatcctcaaatgccaagcccaaagaaccagactccccac
aagggcctttcttcttccatgttactcttcactcctttaaacactgctactgctgctgtt
ggcaatgagagtgccaggcctgccacacaagtgtgttccccagctttccccaccctgggc
accactccagctttcagttctcctgcatcctgtgatggaatgtctgcccggggtgatgga
ccagcttgctccctgccccaccttgctcccttggaagacacagtcagtctacctaggact
cctaaacaatcggtctatacagccaaccctctcaaactggttaccaacctgcatgtgcca
ggtaggcgaggacagtctgcctgtgaccgtgactgtggcccccaagcaacacctgcacct
actgagtcattcactttcagagaaaatcagctgtgtggaaacgcatgcctggcgttgcat
gggcattccactgaacagcccgaaacggcacatcctccagctggtgagagcctaaaccca
ggcagtctacaattgctttccaagttaaagaacccctgcagttcctgttctgtggatgtg
agcgccctgtggtgggatcaagctggcttgaaggagccatgcatcgtaactgcttgcgaa
tacgcagtttctctttggaagccgctgcgtacgtggcaatgggagaaaatgtacacctgg
cacttctcggaggttccagtgttacaaatagttccagtgcccaatgtttgtaatctggtg
tgtgtggcattaggaactttggaaatcagagaaatcagggcattgctttggtcctgcggt
gatgaaagtgaaaggcacgtgctcctccaatcaggaaatataaaggctgtgcttggcttg
acaaagcgacggctggtcagcagcagtgggggcccctgtaatcagcaagtggaagtgatg
acgctagcagaggatggcagaagcaaagagaagcgctttctgatgccccctgaagagacg
gtactgacttttgctgaggtgcaggggatgccggaggctctgcttggcaccactgtcatg
agcaatgtcgtcatctggaatttaaggactggtcaactcctgaaaaagatgcacatggcc
ggttcttaccaaggttcagtgtgtcacaaagcctattctgaaatggggctcctgtttgtt
gttctgagtcacccttgtgccaaagagagcgagtgtttgggaagcccagtgtttcagctg
gtggcgatcaaccctaagacggccctgagtttgggggtgctgctgtattgcctgccccaa
gagcaggctggaaggcaagttcctggaaggggatgtgagagatcactgcgcagctgctgt
cttgacttctgggacaattgccatctgggacttggtgctggggcgctgtgctgccctcct
gccacccagtccaggtcaaaattggtcttttgtgagatggtcagctacagattctcattt
gctggctggacagaaagatggaaatatattcatatatcactactcatgaattacagggaa
aacacttttctgggtgcatttgatctcctagcactctttggggacattgggagaactccc
gagtga
DBGET
integrated database retrieval system
