Perognathus longimembris pacificus (Pacific pocket mouse): 125340788
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Entry
125340788 CDS
T08928
Symbol
Vps18
Name
(RefSeq) vacuolar protein sorting-associated protein 18 homolog
KO
K20181
vacuolar protein sorting-associated protein 18
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop04140
Autophagy - animal
plop04142
Lysosome biogenesis
plop04145
Phagocytosis
plop04148
Efferocytosis
plop05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagocytosis
125340788 (Vps18)
04142 Lysosome biogenesis
125340788 (Vps18)
04140 Autophagy - animal
125340788 (Vps18)
04148 Efferocytosis
125340788 (Vps18)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
125340788 (Vps18)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
plop04131
]
125340788 (Vps18)
Membrane trafficking [BR:
plop04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
125340788 (Vps18)
Hops complex
125340788 (Vps18)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Pep3_Vps18
VPS18_solenoid_2nd
VPS18_solenoid_1st
VPS18_RING_C
Clathrin
zf-RING_5
zf-C3HC4_2
KNOX2
zf-RING_16
zf-RING_UBOX
WD40_Prp19
zf_RING_Vps8
zf-ANAPC11
zf-RING_2
zf-rbx1
CNH
DUF8221
Motif
Other DBs
NCBI-GeneID:
125340788
NCBI-ProteinID:
XP_048188575
LinkDB
All DBs
Position
23:complement(32418056..32426637)
Genome browser
AA seq
973 aa
AA seq
DB search
MASILDEYEDSLSRSAVLQPGCPSVGIPHSGYVNAQLEKEVPIFTKQRIDFTPSDRITSL
VVSSNQLCMSLGKDTLLRIDLGKANEPNHVELGRKDDAKVHKMFLDHTGSHLLIALSNTE
VLYVNRNGQKVRPLARWKGQLVESVGWNKALGTESSTGPILVGTAQGQIFEAELSASEGG
LFGPAPDLYFRPLYVLNEEGGPAPVCSLEAERGPDGRGFVIATTRQRLFQFIGRGAEGAE
AQGFSGLFAAYTDHPPPFREFPSSLGYSELAFYTPKLRSAPRAFAWMMGDGVLYGSLDCG
RPDCLLSEERVWEYPEGVGPGASPPLAIVLTQFHFLLLLADRVEAVCTLTGQVVLRDHFL
EKFGPLRHMAKDAASGQLWAHTERAVFRYHVQREARDVWRTYLDMNRFDLAKEYCRERPD
CLDTVLAREADFCFRQRRYLESARCYALTQSYFEEIALKFLEARQEEALVEFLQRKLAGL
KPAERTQATLLTTWLTELYLSQLGALQSDPDTRHLYRETQERFRAFLSSPRHKEWLFASR
ASIHELLASHGDTEHMVYFAVIMQDYERVVAYHCQHEAYEEALAVLARHRDPQLFYKFSP
ILIRHIPRQLVDAWMEMGSRLDARQLIPALVNYSQGGEAQQVSQAIRYMEFCVNVLGETE
QAIHNYLLSLYARGQPDSLLAYLEQAGASPHRVHYDLKYALRLCAEHGHHRACVHVYKVL
ELYEEAVDLALQVDVDLAKQCADLPEEDEELRKKLWLKIARHVVQEEEDVQTAMACLASC
PLLKIEDVLPFFPDFVTIDHFKEAICSSLKAYNHHIQELQREMEEATASAQRIRRDLQEL
RGRYGTVEHQDKCAGCDFPLLSRPFYLFLCGHMFHADCLLQAARPGLPAYKQARLEELQR
KLAAAPPAAKGSARAKEADAGAAAAGPSREQLKADLDELVAAECVYCGELMIRSIDRPFI
DPQRYEEEHLSWL
NT seq
2922 nt
NT seq
+upstream
nt +downstream
nt
atggcgtccatcctggatgagtatgaggactctctgtcccgctcggccgtcctgcagccc
ggctgccccagcgtgggcatcccgcactcggggtatgtaaatgcccagctggagaaggaa
gtgcccatctttaccaagcagcgcatcgacttcactccctctgaccgcatcacgagcctc
gtggtctccagcaatcagctctgcatgagcctgggcaaggacacactgctccgcatcgac
ttgggcaaagccaacgaacccaaccacgtggagctggggcgcaaggatgatgccaaagtc
cacaagatgtttctggaccacactggctcgcacctgctcattgctctgagcaacaccgag
gtgctctacgtgaaccggaatggacagaaggtccggcccctggcccgctggaaggggcag
ctggtggagagtgtgggctggaacaaagccctgggcacggagagcagcacgggccccatc
ctggtgggcactgcccaaggccagatcttcgaagcggagctctcagccagtgagggcggg
ctgttcggccctgcccccgatctctacttccgtccattgtacgtgctaaatgaagaaggg
ggcccagcgcccgtgtgctccctggaggcggagcggggcccggacgggcgcggctttgtc
atcgccaccacgcgccagcgcctcttccagttcatcggccgaggtgccgagggggccgag
gcccagggcttctcggggctctttgcggcctacacagaccacccacccccgttccgggag
tttcccagcagcctgggctatagcgagctggccttctacacccccaagttgcgctcggcg
ccgcgagccttcgcctggatgatgggggacggcgtgctgtacggctcgctggactgcggg
cgccccgactgcctgctgagcgaggagcgcgtgtgggagtacccggagggggtgggcccc
ggcgccagcccgcccctggccatcgtgctcacgcagttccacttcctgctgctgctggcg
gaccgcgtggaggcggtgtgcacgctcacggggcaggtggtgctgcgcgaccacttcctg
gagaagttcgggccgctgcggcacatggcgaaggacgcggccagcgggcagctgtgggcg
cacacggagcgcgccgtcttccgctaccacgtgcagcgcgaggcccgcgacgtctggcgc
acctacctggacatgaaccgcttcgacctggccaaggagtactgccgggagcggcccgac
tgcctggacaccgtgctggcccgcgaggccgacttctgcttccgccagcggcgctacctg
gagagcgcgcgctgctacgcgctcacccagagctacttcgaggagattgcgctcaagttc
ctggaggcccggcaggaggaggcgctggtggagttcctgcagagaaaactcgcgggtctg
aagccggccgagcgcacccaggccacgctcctcaccacctggctgacggagctctacctg
agccagctcggggccctgcagagcgaccccgacacccgccacctctaccgggagacccag
gagcgcttccgcgccttcctcagcagcccccggcacaaggagtggctctttgccagccgg
gcttctatccacgagctgctggccagccacggggacacggagcacatggtgtacttcgcc
gtgatcatgcaggactacgagcgggtggtggcctaccactgccagcacgaggcctacgag
gaggccctggccgtgctcgcccgccaccgcgacccccagctcttctacaagttctctccc
atcctcatccgtcacatcccccgccagctggtggacgcctggatggagatgggcagccgg
ctggacgcccggcagctcatccccgccctggtgaactacagccagggcggcgaggcccag
caggtgagccaggccatccgctacatggagttctgcgtgaacgtgctcggggaaacggag
caagccattcacaactacctgctgtcgctgtacgcccggggccagcccgactcgctgctg
gcctacctggagcaagccggggccagcccgcaccgcgtgcactacgacctcaagtacgcc
ctgcgcctctgcgccgagcacggccaccaccgcgcctgcgtccacgtgtacaaggtgctg
gagctgtacgaggaggcggtggacctggccctgcaggttgacgtggacctggccaagcag
tgtgcagacttgcccgaggaggatgaggagctgcgtaagaagctgtggctgaagattgct
cggcacgtggtgcaggaggaagaggatgtgcagaccgccatggcctgtctggccagctgc
cccttgctcaagatcgaagatgtgcttcccttcttccccgatttcgtcaccatcgaccac
ttcaaggaggcgatctgcagctcgctcaaggcctacaaccaccacatccaggagctgcag
cgggagatggaggaggccacggccagcgcccagcgcatccggcgggacctgcaggagctg
cgcggccgctacggcacggtggagcaccaggacaagtgcgccggctgcgacttccccctg
ctcagccgccccttctacctcttcctctgcggccacatgttccacgccgactgcctcctg
caggccgcgcggcccggcctgcccgcctacaagcaggcccggctggaggagctgcagcgc
aagctcgccgccgcgccccccgcagccaagggctccgcccgcgccaaggaggcggacgcg
ggcgccgccgccgcggggcccagccgggagcagctcaaggccgacctggacgaactggtg
gccgccgagtgcgtgtactgcggggagctcatgatccgctccatagaccggcccttcatc
gacccccagcgctacgaggaggagcacctcagctggttgtag
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