Perognathus longimembris pacificus (Pacific pocket mouse): 125340952
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Entry
125340952 CDS
T08928
Symbol
Vps39
Name
(RefSeq) vam6/Vps39-like protein
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop04140
Autophagy - animal
plop04148
Efferocytosis
plop05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
125340952 (Vps39)
04148 Efferocytosis
125340952 (Vps39)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
125340952 (Vps39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
plop04131
]
125340952 (Vps39)
Membrane trafficking [BR:
plop04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
125340952 (Vps39)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
TPR_Vps41
Clathrin
Beta-prop_RIG_2nd
Lgl_C
EcoR124_C
DUF4145
Motif
Other DBs
NCBI-GeneID:
125340952
NCBI-ProteinID:
XP_048188845
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All DBs
Position
23:31693665..31729294
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AA seq
875 aa
AA seq
DB search
MHDAFEPVPILEKLPLQIDCLAAWEEWLLVGTKQGHLLLYRIRKDVGCNRFEVTLEKSNK
NFSKKIQQIHVVSQFKILVSLLENNIYVHDLLTFQQITTVSKAKGASLFTCDLQHTETGE
EVLRLCVAVKKKLQLYFWKDREFHELQGDFSVPDVPKSMAWCENSICVGFKRDYYLIRVD
GKGSIKELFPTGKQLEPLVAPLADGKVAVGQDDLTVVLNEEGICTQKCALNWTDIPVAME
HQPPYIIAVLPRYVEIRTFEPRLLVQSIELQRPRFITSGGSNIIYVASNHFVWRLLPVPM
ATQIQQLLQDKQFELALQLAEMKDDSDSEKQQQIHHIKNLYAFNLFCQKRFDESMQVFAK
LGTDPTHVMGLYPDLLPTDYRKQLQYPNPLPVLSGAELEKAHLALIDYLTQKRSQLVKKL
NDSDHQSSTSPLMEGTPTIKSKKKLLQIIDTTLLKCYLHTNVALVAPLLRLENNHCHIEE
SEHVLKKAHKYSELIILYEKKGLHEKALQVLVDQSKKANSPLKGHERTVQYLQHLGTENL
LLIFSYSMWVLRDFPEDGLKIFTEDLPEVESLPRDQVLSFLKGNFKGLAIPYLEHIIHVW
EETGSQFHNCLIQLYCEKVQGLMKEYLLSFPAGKTPVPAGEEEGELGEYRQKLLMFLEIS
SYYDPGRLICDFPFDGLLEERALLLGRMGKHEQALFLYVHVLKDTRMAEEYCHKHYDQNK
DGNKDVYLSLLRMYLSPPSIHCLGPIKLELLEPQANLQAALQVLELHHSKLDTTKAINLL
PANTQVNDIRIFLEKVLEENAQKKRFNQVLKNLLHAEFLRVQEERILHQQVKCIITEEKV
CTVCKKKIGNSAFARYPNGVVVHYFCSKEVNPADT
NT seq
2628 nt
NT seq
+upstream
nt +downstream
nt
atgcacgacgctttcgagccggtgccgattctggaaaagttgcctctgcagatcgactgt
ctggctgcctgggaggaatggcttcttgttggaaccaaacaaggacatcttcttctctat
aggattcggaaggatgttggttgcaacaggtttgaagtgacactagagaagtccaataag
aacttctccaaaaagatccagcagatccatgtggtttcccagtttaagattctagtcagc
ttgttagaaaacaacatttatgtccatgacctgttgacatttcaacaaatcactacggtt
tcaaaggcaaagggcgcgtcgctgttcacatgtgacctgcagcacacggagacgggcgag
gaggtgttgcggctgtgtgtggcggtgaaaaagaaactgcagctttacttctggaaggac
agggagtttcatgaactgcagggggacttcagtgtacccgatgtgcccaagtccatggca
tggtgtgagaactctatctgtgtgggcttcaagagagactattacctgatcagggtggat
ggaaaggggtccatcaaagagctctttccaacaggaaaacagctggagcccttagttgcc
cccctggcagatgggaaagtggctgtgggtcaggatgatctcaccgtggtgctcaacgag
gaaggcatctgcacgcagaagtgcgccctgaactggacagacataccggtggctatggag
caccagcctccatatatcatcgccgtgttgcctcggtatgtagagatccggacatttgag
ccaaggcttctggtccagagcattgaactgcaaagaccccgtttcatcacttcaggggga
tccaacattatctatgtggccagcaatcatttcgtctggagactccttcctgtgcccatg
gccacccagatccagcagcttcttcaagacaagcagttcgagttggctctgcagcttgca
gaaatgaaagatgattcagatagtgaaaagcaacaacaaatccatcacatcaagaacttg
tacgccttcaatctcttctgccagaagcgctttgatgagtccatgcaggtctttgcaaag
cttggcacagatcccacccatgtgatgggcctgtaccccgacctgctgcccacagactac
aggaagcagctacagtacccaaacccactgcctgtgctctctggtgctgagttggagaag
gctcacttggctctgattgactatctgacacagaaacgaagtcagctggtgaagaagctg
aatgactctgatcaccagtccagcacctccccgctcatggaaggcactcccaccatcaaa
tccaagaagaagctgctgcagatcattgacaccaccctgctcaagtgctacctccacacc
aatgtggccctggtggcccccctgctgcgcctggagaacaatcactgccacatcgaggag
agcgagcacgtgctgaagaaggcccacaagtacagcgagctgatcatcctgtacgagaag
aaggggctccacgagaaagctctgcaggtgctggtggaccagtccaagaaagccaactcc
cccctgaaaggccacgagaggaccgtgcagtacctgcagcacctgggcacagaaaacctg
cttttgattttttcctactccatgtgggtgctgagagacttcccggaagatggtctgaag
atatttaccgaagatctcccggaggtggagtctctaccacgagatcaagtgctcagcttc
ttaaaagggaattttaagggtctggctattccttatctggagcacatcatccacgtttgg
gaggaaacaggctcccagttccacaactgcctgatccagctgtactgcgagaaggtgcaa
ggtctgatgaaggagtacctcctgtccttccccgcaggcaaaacccctgttcctgctgga
gaagaagaaggcgagctgggagaataccggcagaagctgctcatgttcttggagatttcc
agctactacgacccaggtcggctcatctgtgacttcccttttgatggtctcttagaagaa
cgcgctctcctgctggggcgcatggggaaacatgagcaagcactcttcctctatgtccac
gtcttgaaggataccaggatggctgaggagtactgtcacaaacactatgaccaaaacaaa
gatggcaacaaagatgtatatctgtccctgcttcggatgtacctgtcacccccaagcatt
cactgcctggggccaatcaagctggagctgctagagcctcaggcaaacctccaggccgcc
ctgcaagtgcttgagctgcaccacagcaaactggacaccaccaaggccatcaaccttctg
ccagcaaacactcaggtcaatgacatacgcatctttctggaaaaggtcttggaagaaaat
gcacaaaagaaacggttcaatcaagtgctcaagaaccttctccatgctgagttcctgagg
gtccaggaagaacggattttacaccagcaggtgaagtgcatcatcacagaggagaaagtg
tgcacagtgtgtaagaagaagattgggaacagtgcgtttgcaagataccccaatggcgtg
gttgtacactacttctgttccaaagaggtaaacccagccgacacctga
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