Perognathus longimembris pacificus (Pacific pocket mouse): 125341126
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Entry
125341126 CDS
T08928
Symbol
Atxn2l
Name
(RefSeq) ataxin-2-like protein isoform X1
KO
K23625
ataxin 2/2L
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop05014
Amyotrophic lateral sclerosis
plop05017
Spinocerebellar ataxia
plop05022
Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09160 Human Diseases
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
125341126 (Atxn2l)
05017 Spinocerebellar ataxia
125341126 (Atxn2l)
05022 Pathways of neurodegeneration - multiple diseases
125341126 (Atxn2l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
plop03019
]
125341126 (Atxn2l)
Messenger RNA biogenesis [BR:
plop03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
125341126 (Atxn2l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SM-ATX
LsmAD
PAM2
DUF5415
Motif
Other DBs
NCBI-GeneID:
125341126
NCBI-ProteinID:
XP_048189102
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All DBs
Position
23:complement(6015463..6030183)
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AA seq
1096 aa
AA seq
DB search
MLKPQPPQQTSQPPQPPPTQQAVARRPPGGTSPPNGGLPGPLAVTAAPPGPPVVASPCLG
PAAGSGLRRGAEGILAPPPHQERPGAAAIGSARGQSTGKGPPQSPVFEGVYNNSRMLHFL
TAVVGSTCDVKVKNGTTYEGIFKTLSSKFELAVDAVHRKASEPAGGPRREDIVDTMVFKP
SDVMLVHFRNVDFNYATKDKFTDSAIAMNSKVNGEHKEKVLQRWEGGDSNSDDYDLESDM
SNGWDPNEMFKFNEENYGVKTTYDSSLSSYTVPLEKDNSEEFRQRELRAAQLAREIESSP
QYRLRIAMENEDGRTEEEKHSAVQRQGSGRESPSLASREGKYIPLPQRVREGPRGGVRCS
SSRGGRPGLSSLPPRGPHHLDNSSPGPGSETRGINGGPSRMSPKAQRPLRGGKTLSSPNS
RPSGEASVPPPAAALPFLPVGRMYPPRSPKSAVPAPISTPCPEPPLGSAVATSAASIPVT
SVVDPGAGSITPASPKISLTPTDVKEVPAKEPGRTLEPQDLARIAGKVSGLQNEQKRFQL
EELRKFGAQFKLQPPSSPETSLDPFSPRILKEEAKGKEKEVDGLLTSESMGSPVSSKTES
VSDKEDKPPLASAGGAEGSEQPPPPCPSQTGSPPVGLIKGDDKDEGPVAEQVKKSTLNPN
AKEFNPTKPLLSVNKSTSTPTSPGPRTHSTPSIPVLTAGQSGLYSPQYISYIPQIHMGPA
VQAPQMYPYPVSNSVPGQQGKYRGAKGSLPPQRSDQHQPASAPPMMQAAAAAGPPLVAAT
PYSSYIPYNPQQFPGQPAMMQPMAHYPSQPVFAPMLQSNQRMLTSGSHPPAIVSSSTPQY
PSAEQPTPQALYATVHQSYPHHATQLHAHQPQPATTPTGSQPQSQHAAPSPVQHQAGQAP
HLGSGQPQQNLYHPGALTGTPPSLPPGPSAQSPQSSFPQPAAVYAIHPHQQLPHGFTNMA
HVTQAHVQTGVTAAPPPHPGAPHPPQVMLLHPTQGHGGPPQGAVPPSGVPALSASTPSPY
PYIGHPQGEQPGQAPGFPGGADDRILCRVGRSHSRRRQGLAPGSVLCFPPSSLSCDPAAP
LPTASPALSDPDCLLT
NT seq
3291 nt
NT seq
+upstream
nt +downstream
nt
atgttgaagcctcagccgccacaacagacctctcagcccccacagccgccccccacgcaa
caggccgtggcccgccggcctcccggcggcaccagccctcccaacggcggcctcccgggg
ccgctggccgtcaccgcggctccgccggggcctcccgtcgtcgcctccccgtgcctgggg
cccgcggctgggagcgggcttcgccggggagccgaaggcatcttagcgccgccgccgcac
caggagaggcccggggccgccgccatcggcagcgccaggggacagagtactggaaaagga
cccccacagtcacctgtgtttgaaggtgtctataataattccaggatgctgcatttcctg
acagctgtggtgggctccacttgtgatgtaaaggtgaagaatggcactacctatgaaggc
attttcaagactctgagctcaaagtttgagctggcagtagatgctgtgcaccggaaagca
tctgagccagcgggtggccctcgtcgagaagacattgtagacaccatggtgtttaagcca
agtgatgtcatgcttgtccacttccgaaatgttgacttcaattatgctactaaagacaag
ttcactgactcagccattgccatgaactcgaaggtgaacggtgagcacaaagagaaggtg
cttcagcgctgggagggtggtgacagcaacagcgatgactatgatctcgagtctgacatg
tccaatggatgggaccccaacgaaatgttcaagttcaatgaggagaactatggcgtgaag
accacttacgacagcagtctctcctcttacacggtacccttagaaaaagacaactcagaa
gagttccgtcagcgggagctgcgtgcagcccagctggctcgagagatcgagtcaagtccc
cagtaccgcctacggattgctatggaaaatgaggacgggcgcacagaggaggagaagcat
agtgcagtccaaaggcaagggtcagggcgagagagccccagcctggcatccagggagggg
aagtatatccctttgccgcagagagttcgggaaggtccccggggaggagttcggtgtagc
agttctcgaggcgggaggcctggccttagctcattgccaccccgtggtcctcaccacctc
gacaacagcagccctggcccagggtctgagactcgtgggatcaatggaggcccttcccgc
atgtctcccaaggcacagcggcctctgagaggtggtaagactctgtcttcacctaacagc
aggccttccggagaagcttccgttccacctcctgctgcagctctcccttttcttccagtg
ggacggatgtaccccccacgctctcccaagtctgctgtccctgccccaatctcaactccg
tgtcctgagcctcctcttggctcggcagtagcaacttctgcagcctccatccctgtcaca
tctgttgtggatcctggagcaggctctattaccccagcttctccaaagatctcactgacc
cccacagatgtgaaagaagtcccagccaaggagcctggcaggaccctggaaccccaggac
ctggcccggatagctgggaaagtctctggccttcaaaatgaacagaaacgatttcaattg
gaagaactaagaaagtttggggcccagttcaagcttcagccccccagctcccctgagacc
agcctggatcctttttccccccggatcctaaaggaggaggccaaaggaaaggagaaggag
gttgatggtttattaacctcagagtccatggggtctccagtctcctcaaagacggagtcc
gtatccgataaagaagacaaaccacctctggcatcagcaggaggcgctgagggttcggag
cagcctccaccaccttgcccgagccagactggcagccccccagtgggccttataaaggga
gatgacaaggatgagggccctgtcgctgaacaagtaaagaaatcaacgttgaaccccaat
gccaaggagtttaatcctacaaagcctctactatctgtgaacaaatctaccagtactcca
acttctccagggcctcgcactcactcaactccctccatcccggtgctgacagcaggccag
agtgggctctacagcccgcagtacatctcctacatacctcagatccatatgggaccagct
gtgcaggcacctcagatgtatccatatcctgtatccaactcagtgcctgggcagcagggc
aagtaccggggtgcaaaaggctctctcccccctcagcgctcagaccaacaccagccagcc
tcagcccctcccatgatgcaggcggccgccgctgctggcccacccttggtggccgccaca
ccatattcttcctacatcccctacaatccacagcagttcccaggccagccggcaatgatg
cagcctatggcccactacccctcacagccggtgtttgcacccatgcttcaaagcaaccaa
cgcatgctgacgtcgggtagccatcccccggccattgtgtcatcctccactcctcagtac
ccttctgcagagcagcccaccccccaagccctctatgccactgttcaccagtcctatcca
caccatgccacgcagctccatgctcaccagccgcaaccggccaccacgcctactgggagc
cagccgcaatcccagcatgcggcccccagtcccgtccagcatcaggcgggacaggcccca
cacctgggcagtggacagccacagcagaatctgtaccacccaggggccctgacaggcacg
ccaccgtctctgccaccgggaccatctgcccagtcccctcagagcagcttcccccagcca
gccgctgtatatgccatccatccccaccagcagctgccccacggcttcaccaacatggcc
cacgttacccaggcccatgtccaaactggagtcacggcagccccgcccccgcaccctggg
gctccccacccgccccaggtgatgctgctgcaccccacccagggccatgggggccccccc
caaggcgcggtacccccgagtggggtgcctgcactctcagcttccacaccctcaccctac
ccctacatcggacacccccaaggtgagcagcctggccaggcgcctggatttccaggagga
gccgatgacaggattctatgtagggtgggcagaagccacagtcgccgccgccaggggctt
gctcctggctctgtcctttgcttccctccgtcctcgctcagttgtgatccagcagccccc
ctccccactgcctccccagctctcagtgaccccgactgtctcctgacttag
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