Perognathus longimembris pacificus (Pacific pocket mouse): 125341168
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Entry
125341168 CDS
T08928
Symbol
Rbbp6
Name
(RefSeq) E3 ubiquitin-protein ligase RBBP6 isoform X1
KO
K10624
E3 ubiquitin-protein ligase RBBP6 [EC:
2.3.2.27
]
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
plop04121
]
125341168 (Rbbp6)
Enzymes [BR:
plop01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
125341168 (Rbbp6)
Ubiquitin system [BR:
plop04121
]
Ubiquitin ligases (E3)
U-box type E3
125341168 (Rbbp6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DWNN
zf-CCHC_2
U-box
zf-C3HC4_2
zf-C3HC4_3
zf-CCHC
zf-RING_UBOX
zf-RING_2
zf-C3HC4
zf-RING_5
zf-C3HC4_4
Motif
Other DBs
NCBI-GeneID:
125341168
NCBI-ProteinID:
XP_048189206
LinkDB
All DBs
Position
23:3750630..3786850
Genome browser
AA seq
1823 aa
AA seq
DB search
MSCVHYKFSSKLNYDTVTFDGLHISLCDLKKQIMGREKLKAADCDLQITNAQTKEEYTDD
NALIPKNSSVIVRRIPIGGVKSTSKTYVISRTEPVMGTTKAIDDSSASITLAQLTKTANL
AEANASEEDKIKAMMSQSGHEYDPINYMKKPLGPPPPSYTCFRCGKPGHYIKNCPTNGDK
NFESGPRIKKSTGIPRSFMMEVKDPNMKGAMLTNTGKYAIPTIDAEAYAIGKKEKPPFLP
EEPSSSSEEDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCH
QNDVSPDALIANKFLRQAVNNFKNETGYTKRLRKQLPPPPPPIPPPRPLIQRNLQPLMRS
PISRQQDPLMIPVTSSSAHPAPSISSLASNQSLAPPVPGSASNAPAPVPDITATVSISVH
SEKSDGPFRDSDTKLLPAAALASEHSKGTSSIALTALMEEKGYQVPVLGTPSLLGQSLLH
GQLIPTTGPVRINAARPGGGRPGWEHWITGLHHHGSLTRCLSSNKLGYLVSPPQQIRRGE
RSCYRSINRGRHHSERSQRTQGPSLPATPVFVPVPPPPLYPPPPHTLPLPPGVPPPQFSP
QFPPGQPPPAGYSVPPPGFPPAPANLSTPWVSSGVQTAHSNTIPTTQAPPLSREEFYREQ
RRLKEEEKKKSKLDEFTNDFAKELMEYKKIQKERRRSFSRSKSPYSGSSYSRSSYTYSKS
RSGSTRSRSYSRSFSRSHSRSYSRSPPYPRRGRGKSRNYRSRSRSHGYHRSRSRSPPYRR
YHSRSRSPQSFRGQSPNKRNVPQGEAEREYFNRYREVPPPYDMKAYYGRSVDFRDSFEKD
RYREWERKYREWYEKYYKGYAAGAQPRPSANRENFSPDRLLPLNIRNSPFTRGRREDYVG
GQSHRSRNIGGSYPEKLSARDSHNQKDNTKSKEKDSENVPGDGKGNKHKKHRKRRKGEES
EGFLNPELLETSRKSREPTGVEETKTDTLFVLPSRDDATPVRDEPMDAESITFKSMSEKD
KREKDKPKAKSDKTKRKSDGSATSKKENAVKPAKGPQEKLDGEREKSPRAEPPLKKAKEE
APKTDAAKPSSSSSSQKDEKVPGTPRKTHSKSTKEHQETKPVKEEKVKKDYSKDTKPEKP
TNKEEKAKKPEKSKTLESKGEKRKRKTEEKGVDKDLESSSMKISKLEGTEIVKPSPKRKM
EPDVEKMDRTPEKDKAASSTAPAKKIKLNRETGKKIGSTENVSSAKEPSEKLESASGKIK
QEKVKGKAKRKVTGTEGSSSTLVDYTSTSSTGGSPVRKCEEKTDTKRTVIKTMEEYNNDN
TAPAEDVIIMIQVPQSKWDKDDFESEEEEMRSTQPMPSVAKPSSVIKTVSTKPSTAVKYA
EKDSEPAEKIQKLTKEVSHEIVQHEVKSSKNSASSEKGKTKDRDHSVLEKENPEKRKNST
QPEKDNNLDRLSEQGTFKSLSQSSKETRPSDNKHDSVRGSSSKDFTPNRDKKTDFDNREH
SSSKRRDERSELTRRKDSPPRSKDKDSASGQKSRPREERDLPKKATGDSKKSNSSPSRDK
KPHDYKAAYDTKRSSEETKSVDKNPCKDREKHVSEAWSNKESSGAKLPSMPSVPSTPIPP
IPPSTPEPQVEKEPVTAHLDKNAVKPKPQPSHSSRLSSDLTRETDEAAFEPDYNESDSES
NISVKEEETSTNISKDLKEKATVEKAKESAAPAAPSQAGVSQSQSSPSGSPSRSPSPSGS
QTRSHSSSASSAESQDSKKKKKKKEKKKHKKHKKHKKHKKHAGTEAELEKSQKHKHKKKK
SKKSKDKEKEKEKDDQKAKSVTV
NT seq
5472 nt
NT seq
+upstream
nt +downstream
nt
atgtcttgtgtacattataaattctcctctaaactcaactatgataccgtcacttttgat
ggactccacatctccctctgcgacttaaagaagcagattatggggagagagaagctgaaa
gctgccgattgcgacctgcagatcactaacgcgcagacgaaagaagaatatactgatgat
aatgctctgattcctaagaactcatctgtaattgttagaagaattcctattggaggtgtt
aaatccacaagcaagacatatgttataagtcgaactgagccagtgatgggaactacaaaa
gcaattgatgactcttctgcatctattactctggcccagcttacaaagaccgccaatctg
gctgaagccaatgcttctgaagaagataaaattaaagcaatgatgtcgcaatctggccat
gaatacgacccaatcaattacatgaagaaacctctaggtccaccacctccatcctatacc
tgtttccgttgtggtaaacctggccattatattaagaattgtccaacaaatggggataag
aactttgaatctggtcctcggattaaaaagagcactgggattcccagaagttttatgatg
gaggtgaaagatcctaacatgaaaggtgcaatgcttaccaacactggaaaatatgcaata
ccaacaatagatgcagaggcatatgcaatagggaagaaagaaaaaccacccttcctacca
gaggagccatcctcttcatcagaagaggacgatcccatcccagacgaactgctgtgcctc
atctgcaaagacatcatgaccgatgctgttgtcattccctgctgtggaaacagttactgt
gatgagtgtataagaacagcactcttggaatcagatgaacatacatgtccaacatgtcat
caaaatgatgtatctcctgatgctttaattgccaataaatttttacgacaggctgttaat
aacttcaaaaatgaaactggttatacaaaaagactgcgaaaacaattacctccaccacca
cccccaataccacctccaagacctctcattcagcggaacctgcagcctctcatgaggtct
ccaatatcacgacaacaagatcctctgatgattccagtgacgtcttcatcggctcaccct
gctccctcaatatcttcactagcgtccaaccagtccttggcccctcctgtacctggaagt
gcatctaatgccccagctcctgtacccgatataaccgcaacagtgtccatatcagtccat
tcagaaaagtctgacggacctttccgggactctgatactaaattattgccagctgccgcc
cttgcttcagaacattcaaagggaacgtcctcaattgcacttactgctcttatggaggag
aagggttaccaggtgcctgtccttggaactccatctttgctgggacagtcgttattacat
ggacaattgatccctacgactggcccagtaaggataaatgctgctcggccaggtgggggt
cggccaggctgggaacactggattacaggtttgcaccaccatggcagtcttacccggtgt
ttaagttccaacaagcttggatatctggtttctccaccacagcaaattagaagaggggag
agaagctgctacagaagtataaatcgtgggcgacaccacagtgaaagatcccagaggact
caaggcccatcactaccagcaactccagtcttcgtacctgttccaccacctcctctgtat
ccacctcccccccacacgcttcctctccctccaggtgtgcctcccccacagttttctcct
cagtttcctcctggccagcctcctcctgctgggtatagcgtccctcctccagggtttccg
ccagcacctgccaacttatccacaccctgggtatcatcaggagtgcagacagcccattca
aataccatcccaacaacacaagcgccacctttgtccagggaagaattctatagagaacag
cggcgactaaaagaagaggaaaagaaaaagtccaagctagatgagtttacaaatgatttt
gctaaggaattgatggaatacaaaaagattcaaaaggagcgtaggcgctcattttccagg
tctaaatctccctatagtggttcatcatattcaagaagttcatatacttactctaagtca
agatctggttcaacacgttcacgctcttattctcgatccttcagccgctcgcattctcgt
tcctattcgagatcacctccataccccagaagaggcagaggcaagagtcgaaattaccgt
tctcgctctagatcgcacggatatcatcggtctaggtccaggtcacccccctatagacgg
tatcattcacgatcgagatcgcctcaatcatttagaggccagtctcccaacaagcgtaat
gtacctcaaggagaagcagaacgtgaatattttaatagatacagagaagttccaccgcct
tatgacatgaaagcatattatgggaggagtgttgactttagagactcatttgagaaagac
cgttaccgagaatgggagagaaaatacagagagtggtatgaaaaatattacaaagggtat
gctgctggagcacaacctagaccctcagccaatcgagagaacttttctccagacagactt
ttgcctctcaatatcaggaattcacccttcacaagaggccgcagagaagactatgttggt
ggacagagtcataggagtcgaaatataggtggcagttacccggaaaagctttcagccaga
gacagtcacaatcagaaggataacacaaaatcaaaagagaaggacagtgaaaatgttccc
ggagatggcaaaggaaacaaacacaagaagcacagaaaaagaagaaagggtgaagagagt
gaaggctttctcaacccagagttattagagacttctaggaaatccagagaacctacaggt
gttgaggaaactaagacagatacgttatttgtcctcccaagtagagatgatgctacgcct
gttagggatgagccaatggacgcagaatctatcacgtttaagtccatgtctgaaaaagac
aagcgagaaaaagataagccaaaagcaaaaagtgataagaccaaacggaaaagtgatggg
tctgctacatccaaaaaagaaaatgctgtcaaacccgctaaaggaccccaggaaaagcta
gatggggaacgggaaaaatctcctcgggccgaacctccacttaagaaggccaaagaggag
gctccaaagactgatgctgctaaaccatcatcgtcgtcgtcctctcaaaaggatgaaaag
gtccccgggacccccaggaaaacccactcgaagtccacaaaggagcaccaggagacaaag
cctgtcaaagaggaaaaggtgaagaaggattactccaaagacacaaaaccagaaaagcca
accaacaaggaagaaaaggccaagaagcctgagaagagcaaaacacttgagagcaaggga
gaaaaaagaaagagaaaaacagaagaaaagggtgtggataaagatttggaatcttcttcc
atgaagatctctaaactagaaggaaccgaaatagtgaaaccatctcctaagcgcaaaatg
gagcctgacgttgaaaagatggataggaccccagaaaaagacaaggctgcatcatcaacg
gccccagccaagaaaatcaagctcaacagagaaacggggaagaaaattggaagcacagaa
aatgtttcaagtgcaaaagaaccgtctgaaaaactagagtcagcatctggcaaaattaaa
caggaaaaggtcaaagggaaggctaagcggaaagtaactgggacagaaggctccagctcc
actctcgtggattataccagcacaagttcaactggaggcagtcctgtgcggaaatgtgaa
gaaaaaacagacacaaagcgaactgtgattaaaactatggaagagtacaataatgacaac
acggctcctgctgaagatgttattattatgatccaggttcctcagtccaagtgggacaaa
gatgactttgaatctgaagaagaagagatgagatccacacagcctatgccaagtgtagca
aaaccatccagtgttataaaaactgtgagcaccaagccgtcaactgcagtcaagtatgcc
gagaaagacagtgagccggcagagaaaattcagaagctcaccaaggaggtgagccatgaa
attgtgcagcatgaagtcaaaagttcaaaaaactctgcatctagtgagaagggcaagacc
aaagatcgagaccattcagtgttagaaaaggaaaatcctgaaaagaggaagaatagcact
caaccagagaaagataataatttggaccgactgagtgaacaaggaacctttaaaagtctg
tctcaatcttccaaagagactagaccttcggataataagcacgattctgtgcgtggttcc
tcaagtaaagacttcactcccaatagagataaaaaaactgactttgacaaccgagagcat
tcaagttccaagcggagagatgaaagaagtgagttaacaagaagaaaagactctcctcct
cgcagtaaagataaagactctgcttccggacagaaaagtaggccgagggaggagagagat
ttgcctaaaaaagcaacaggagactccaagaaaagcaattctagcccctcaagagacaaa
aagcctcatgattataaagccgcttatgacactaaacgctcaagtgaagagacaaagtcc
gtagacaaaaatccctgtaaggatcgcgagaagcatgtgtcagaggcgtggagcaataag
gagtcaagtggcgccaagttacctagcatgcccagtgtgcccagcacacccatcccgccc
atcccgcccagcacaccagagccgcaggtagaaaaggagccggtgaccgcacacctggac
aagaatgctgttaagcctaaaccccagccaagccattcctctagactttcctctgaccta
acccgagagactgatgaagctgcttttgaaccagactataatgagagcgacagtgaaagt
aacatatctgtgaaagaagaggaaacgtccacaaatatttccaaggacctaaaagaaaaa
gccacagtagagaaagcaaaagaaagcgcggccccagctgccccgagccaagcaggcgtg
agccagagccagagcagccccagcgggagtcccagccgcagccccagcccctccggaagc
cagacccgcagtcatagcagcagcgccagctcggcagagagccaggacagcaagaagaag
aagaagaagaaggagaagaagaagcacaagaagcataaaaagcataagaagcataagaag
catgcaggcactgaagcagaattggaaaaaagccaaaaacacaaacacaagaaaaagaag
tcgaagaagagcaaagataaagaaaaggagaaggagaaagatgaccaaaaagcgaaatct
gtcacagtgtaa
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integrated database retrieval system
