Perognathus longimembris pacificus (Pacific pocket mouse): 125341216
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Entry
125341216 CDS
T08928
Symbol
Parn
Name
(RefSeq) poly(A)-specific ribonuclease PARN
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125341216 (Parn)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
plop03019
]
125341216 (Parn)
Enzymes [BR:
plop01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
125341216 (Parn)
Messenger RNA biogenesis [BR:
plop03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
125341216 (Parn)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
RNA_bind
R3H
DUF4727
NCBP3
Colicin_E5
Motif
Other DBs
NCBI-GeneID:
125341216
NCBI-ProteinID:
XP_048189272
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Position
23:9654678..9741711
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AA seq
631 aa
AA seq
DB search
MEIIRSNFKSNLHKVYQAIEEADFFAIDGEFSGISDGPSVTTLTNGFDTPEERYQKLKKH
SMDFLLFQFGLCTFKYDHTDSKYITKSFNFYVFPKPFSRSSPDVKFVCQSSSIDFLASQG
FDFNKVFRNGIPYLNQEEERQLREQYDEKRSQANGAGALAYASPNTSQCPVTIPEDQKNF
IEQVVAKIEDLLQSEENKNLDLEPCTGFQRKLIYQTVSWKYPKGIHVETLETEKKERYIV
VSKVDEEERKRREQQKHAKEQEELNDAVGFSRVIHAIANSGKLVVGHNMLLDVMHTVHQF
YCPLPPDLNEFKEMTTCVFPRLLDTKLMASTQPFKEIINNTSLAELEKRLKETPFNPPKV
ESAEGFPSYDTASEQLHEAGYDAYITGLCFISMADYLGSFLGPPKIHVSARSKLIEPFFN
KLYLMRILDIPYLNLEGPDLQPKRDHVLHVTFPKEWKTSDLYQLFSAFGNIHISWIDDTS
AFVSLSQPDLVKIAVNTSKYAESYRIQTYAEYVGKKREEKQTKRKWTEDSWQEVEQKRLD
TKTSSHELQNHDFCTNSFSATSTMGERTASPGAGEACSEDGAAGEESECEAEPLYEGRKK
AKKLKRMKKELPRAGSCMDSPAKLFEVPDTW
NT seq
1896 nt
NT seq
+upstream
nt +downstream
nt
atggagataatccgaagcaattttaagagtaatcttcacaaagtgtaccaggccatagag
gaggcggacttcttcgctatcgatggggagttttcaggaatcagtgatggaccctcagtg
accacattaactaatggttttgacactccagaagagagatatcagaagcttaaaaagcat
tccatggactttttgctgtttcagtttggcctttgcacttttaagtatgaccacacagat
tcaaagtatataacaaagtcatttaacttctacgtttttcccaagcccttcagtagatct
tcaccagatgtcaaatttgtttgtcagagctccagcattgacttcctagcgagccaagga
tttgattttaataaagtttttcgcaatggaattccatatttaaatcaggaagaagaaaga
cagttgagagagcaatatgatgaaaagcgttctcaggctaatggtgctggggcactggcc
tatgcatctcccaacacctcacagtgtcctgtgacaattcccgaagatcagaagaatttt
attgagcaagttgtagcgaaaatagaagacttactgcaaagtgaagagaacaagaatttg
gatttagagccatgtaccgggttccaaaggaagctaatttatcaaactgtgagctggaag
tatcccaaaggcattcatgttgagactttagaaactgaaaagaaggagcgatacatagtt
gtcagcaaagtagatgaggaagaacgcaagagaagggagcaacagaaacatgctaaagaa
caggaggagttgaatgatgctgtgggattctcaagggtcattcatgccatcgctaattct
gggaagctcgttgtgggacataatatgctcctggatgtcatgcacacggtccaccagttc
tactgcccactgcctccggacttgaatgagtttaaagagatgacaacgtgtgtattcccc
aggctcttggatactaaattgatggccagcacacagccttttaaggaaatcattaacaac
acatcccttgcagagttggaaaagcggttaaaagagacacctttcaatcctcctaaagtc
gaaagtgcggaaggttttccaagttatgacacagcttctgagcagctccacgaggccggc
tacgatgcttacatcactggactgtgctttatctccatggctgattacctaggttctttt
cttggtccgccaaaaattcatgtgtctgccagatcaaaactcatcgagccatttttcaac
aaactgtaccttatgaggatcctggacatcccctatttaaacctggaagggccagacttg
cagcctaaacgtgaccatgttctccacgtgacatttcctaaggagtggaaaaccagcgac
ctttaccaactcttcagtgcctttggtaacattcacatatcctggattgatgacacatca
gccttcgtttctctaagccagcctgacctagttaagattgctgtgaataccagcaaatac
gcagaaagctatcgaatccagacctatgccgagtatgtggggaagaagcgggaagagaag
caaaccaagaggaaatggacagaagacagctggcaggaggtagagcagaagagactggac
acgaaaacatcgtcccacgagttacagaaccacgacttctgcaccaacagcttctcggcc
accagcaccatgggagagaggaccgccagccctggggcaggagaagcctgctcggaggac
ggagcggccggcgaggaatctgagtgcgaggctgagcccctctacgagggacgcaagaag
gccaagaaattgaaaaggatgaagaaagagcttcctcgggcagggagctgcatggacagc
ccggccaagctctttgaagttcctgacacctggtaa
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